Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4954
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0530 + 30035854-30036765                                         30   1.2  
06_03_1296 - 29104857-29105870                                         28   5.0  
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    28   5.0  
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    27   8.7  
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156     27   8.7  
03_02_0009 + 4891545-4892147,4892757-4893308                           27   8.7  
03_01_0173 + 1407891-1408097,1409746-1410123                           27   8.7  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    27   8.7  

>01_06_0530 + 30035854-30036765
          Length = 303

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +3

Query: 78  PALHPAICPNYPFCDVDALAKHT-PQGNADTRNGCATQPSCQSLELRRILC-PSI--RLI 245
           PALHPA+ P YP  + DA       Q  A+ R     +P+  S     +L  PS+   L 
Sbjct: 19  PALHPAVVPAYPPPESDADESWVWSQIKAEARRDADAEPALASFLYATVLSHPSLDRSLA 78

Query: 246 FRLPYALTTHT 278
           F L   L + T
Sbjct: 79  FHLANKLCSST 89


>06_03_1296 - 29104857-29105870
          Length = 337

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 436 NTGWVSLCMSKLPPLSFHQSVGTLLKCVTSIHYDSPDMYSAN 561
           N GW  L M++  PLSF   +  L+   T  H D P + S N
Sbjct: 58  NGGW--LLMAQHKPLSFQDQIVFLVHPSTGTHLDLPVLRSPN 97


>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 239 PDTWAQNSTQLERLAGWLGCAPIPGIGISLW-GVLSEGVHIAERIVWANGWV 87
           P  + +N+ +   L   L   P+P   I L+ G+LS G H  ER+     W+
Sbjct: 344 PMAYPRNAQRNLELLTELKAPPLPEEPIELFIGILSAGSHFTERMAVRRSWM 395


>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 209 LERLAGWLGCAPIPGIGISLW-GVLSEGVHIAERIVWANGWV 87
           LE L  W    P+P   I ++ G+LS G H AER+     W+
Sbjct: 393 LEMLPIWQA-PPLPDEPIEIFIGILSAGNHFAERMAVRKTWM 433


>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
          Length = 405

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 152 GKCRYQEWVRNPAILPIARAASNSVPKYPADFPAALCP 265
           G C Y EW  NP+  P A  + N+V +        LCP
Sbjct: 194 GGCNYFEWCDNPSPGP-ANVSGNTVFQSDTSVAHMLCP 230


>03_02_0009 + 4891545-4892147,4892757-4893308
          Length = 384

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 191 WLGCAPIPGIGISL-WGVLSEG--VHIAERIVW-ANGWVECRLGTRGPELP 51
           +L C P+P +G SL W   +E     +A R    ++GWV   + TRG  +P
Sbjct: 35  FLKCNPLPVLGASLHWTHHAENGTADVAFRAPQQSSGWVAWGINTRGTTMP 85


>03_01_0173 + 1407891-1408097,1409746-1410123
          Length = 194

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 155 KCRYQEWVRNPAILPIARAASNSVPKYP-ADFPA-ALCPNYP 274
           +CR++EW   P++  IA AAS +      AD      CP+ P
Sbjct: 16  RCRWREWPPQPSVSRIAFAASRAAENGDVADSSGDGACPHLP 57


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 286 SPAVWVVRA*GSRKISRILGHRIRRSSSDWQ 194
           +PAV V     S+KI R++GHR     +D+Q
Sbjct: 354 APAVKVTEVLTSKKIQRLVGHRRILQEADFQ 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,100,127
Number of Sequences: 37544
Number of extensions: 447085
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)