Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4954
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.57 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 402 NSTVTWLINVFNLLNYIYKKCTSAKIVDLLLISVGSLCIHQ 280
           +S ++W  + F+ +NYIY K     + D+ + + G +   Q
Sbjct: 101 DSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQ 141


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 270 THTAGEYTSYLR*STTSQRFLRMY 341
           T    E  SY   +TTS  F+R++
Sbjct: 98  TFFVNEKQSYFHIATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 270 THTAGEYTSYLR*STTSQRFLRMY 341
           T    E  SY   +TTS  F+R++
Sbjct: 98  TFFVNEKQSYFHIATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 270 THTAGEYTSYLR*STTSQRFLRMY 341
           T    E  SY   +TTS  F+R++
Sbjct: 37  TFFVNEKQSYFHIATTSNEFIRIH 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,882
Number of Sequences: 438
Number of extensions: 4513
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)