Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4950
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 30 0.31
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.6
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.2
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.9
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 2.9
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 27 2.9
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 3.8
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 27 3.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 5.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 6.6
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.6
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.7
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 8.7
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 8.7
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +1
Query: 307 MDLPQCVCYVCAALLQKYSRFKTKCLLGQSVLYQILNSGKKITVTSVQELDRSNLKIPFA 486
MDL + Y AA ++ Y K L V +LN KI ++LD+ N ++
Sbjct: 255 MDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLN---KIDAMRPEDLDQKNQELLQT 309
Query: 487 VYTETDVKTIHTVC 528
+ + +VK + T C
Sbjct: 310 IIDDGNVKVVQTSC 323
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 529 DDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYVKDEDTGDFPSQLEETS 690
+D KL KE D++ DS + D++A + +++ + KDE DF LEE +
Sbjct: 4088 EDLKLDEKEG-DVSKDSDLE-DMDMEAADENKEEADAEKDEPMQDFEDPLEENN 4139
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 229 VKMYSLQSNPLQTYFEETLGVNPVCS 306
+K+Y QSN ++ Y+ E+ +N VCS
Sbjct: 25 LKVYWAQSNLVELYYGESFYINIVCS 50
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 643 KDEDTGDFPSQLEETSDDEPLLCPNKEAKKPKE 741
K++ G +TS+DE PN EA+K ++
Sbjct: 56 KEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRRD 88
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 679 EETSDDEPLLCPNKEAKKPKE 741
E+ +DEPL P+ EA+KP++
Sbjct: 287 EDWLEDEPLYIPDPEAQKPED 307
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 520 TVCDDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKD 630
+V ++PKL I E ++ DSK SL+N I D
Sbjct: 13 SVEENPKLNIPEIVESVSDSKPSLKNQFSTTVIDSSD 49
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 475 IPFAVYTETDVKTIHTVCDDPKLPIKEEIDIAIDSKTSLENDLQ-----ANEIFRKDGEY 639
+P T+ V + D LPI+ D ++ ++TS+E + + K+ +
Sbjct: 415 VPIMKTTKAKVLKSLSSLKDEFLPIEILNDESVIAETSIEKEETNVTHLEKPVISKNDDL 474
Query: 640 VKDEDTG--DFPSQLEETSDDEPLLCPNK 720
++ +D DFP E +DD+P + +K
Sbjct: 475 IRGDDLEPYDFPDIDSEDTDDDPTVSRSK 503
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 517 HTVC-DDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYV 642
+T C +DP P KE+I A D KTS++ E F K E V
Sbjct: 119 YTACHEDPVFPKKEKIYKA-DYKTSIQRSRVLAEFFAKVPEKV 160
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 32 VKNAHKPLTRTVLLS*KLYYFISL 103
+ NAH+PL + VLLS +Y ++ L
Sbjct: 835 LSNAHRPLFQQVLLSNFMYSYLDL 858
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 592 ENDLQANEIFRKDGEYVKDEDTGDFPSQLEETSDDEPLLCPNKEAKKPK 738
EN L N++ R D + + + D S +++ DD L N+E PK
Sbjct: 1281 ENSLNFNQL-RGDEKTLAISEKNDNMSFVQDLPDDSSLARMNREVSPPK 1328
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 503 SVSVYTANGIFKLLRSSSWTDVTVIFLPEFSIW*STDC 390
S+S +NG+ S ++ V EFSIW +T+C
Sbjct: 304 SLSFAASNGVDGASSSQVLENILVASDKEFSIWTATEC 341
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 547 IKEEIDIAIDSKTSLENDLQANEIFRKDGEYVKD 648
I E+ID+ + T +N + EI++ E KD
Sbjct: 314 ISEDIDVCLSKITKTKNGRERREIYKNIRELRKD 347
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 493 TETD-VKTIHTVCDDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYVKDEDTGDFP 669
TETD + T HT P L K+E + T+ +N+ +++ E ++ E+ F
Sbjct: 111 TETDTISTTHTSYI-PTLLAKQEENEETKETTTNKNESLPGTSLKRNREIIEKEERSSFH 169
Query: 670 SQLE-ETSDDEPLLCPNKEAK 729
+++ + D P L N+ K
Sbjct: 170 FRVKPKNLDKVPKLAENEGNK 190
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +1
Query: 490 YTETDVKTIHTVCDDPKLPIKEEIDIAIDSKTSL-ENDLQANEIFRKDGEYVKDED---- 654
YT ++KT + + + PK+ + I I ++ L + FR G+ V E
Sbjct: 131 YTSNEIKTGYVITETPKISQNIDTGITIPTQAPLVPQRKNLRQHFRPIGDAVGPESEPEA 190
Query: 655 ---TGDFPSQLEETSDDEPLLCPNKEAKKPKE 741
+G L+ET D NK +K KE
Sbjct: 191 EPKSGIKEHILQETGDATVEELQNKGKEKQKE 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,419
Number of Sequences: 5004
Number of extensions: 59131
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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