Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4950
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 32 0.42
07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455... 31 1.3
05_04_0084 - 17788077-17789240 31 1.3
04_01_0290 + 3843610-3843712,3844088-3846003 30 2.3
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 30 2.3
12_02_1267 - 27448871-27450445 28 6.9
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 9.1
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 28 9.1
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 28 9.1
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 529 DDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYVKDEDTGDFPSQLEETSDDEPLL 708
++ L +E ++ I TS+E L++ + ++G + D D Q + ++DE LL
Sbjct: 1885 EETSLNTEETDEVQIGEDTSIEPQLESVSL--ENGPVEEAGDLADVSKQTDSNTEDEKLL 1942
Query: 709 CPNKE 723
C +E
Sbjct: 1943 CTEEE 1947
>07_03_0272 -
16143201-16144937,16145346-16145351,16145406-16145535,
16145613-16145773,16146608-16146725,16147328-16147441,
16149378-16149469,16149906-16149986,16150168-16150473
Length = 914
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 214 CLQFNVKMYSLQSNPLQTYFEETLGVNPVCSMDLPQCV--CYVCAALLQKYSRFKTKCLL 387
CL + + +Q P + EE LG+ CS + CYV KYS + +
Sbjct: 107 CLTEADRKFLIQFLPTEIDAEENLGLGMCCSSSHANSLSKCYVNVISFLKYSTWSSSLCY 166
Query: 388 GQSVLYQILNSGKKI 432
G + +LN K+I
Sbjct: 167 GDTHPDALLNKEKQI 181
>05_04_0084 - 17788077-17789240
Length = 387
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/84 (28%), Positives = 35/84 (41%)
Frame = +1
Query: 448 QELDRSNLKIPFAVYTETDVKTIHTVCDDPKLPIKEEIDIAIDSKTSLENDLQANEIFRK 627
Q L +S K + +VK DP P +D+ K SL D A++
Sbjct: 67 QGLSKS-AKAAMKAQSRANVKAARRARLDPSAPPSSTLDLL---KKSLA-DQDAHDSSSS 121
Query: 628 DGEYVKDEDTGDFPSQLEETSDDE 699
GE D+D D ++EE +DE
Sbjct: 122 SGEDASDDDDDDDDDEVEEREEDE 145
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +1
Query: 484 AVYTETDVKTIHTVCDDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYVKDEDTGD 663
A Y E D K H++ +D K ++ +D+ L++ + E ++ + KDE+ G
Sbjct: 572 ASYNELDAK--HSLLNDEKNSAQKALDVEKVEAYKLKSKFEELENYKAE----KDEEAGK 625
Query: 664 FPSQLEETSDDEPLLCPNKE 723
+ LEE + +L + E
Sbjct: 626 LKAALEEKKSEIDVLIKDNE 645
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 221 CKHIRHTDSLSMFDEFIYE-FMFTKRIHSVKHFHRFAAYEIDL*NNRASSLKVLFWSTVY 45
C + H + +F++E F +H H H A + + N+ ++ L W+ +Y
Sbjct: 1739 CVILCHAPRKEYYKKFLFEAFPVESHLHHFLHDHMNAEVVVGVIENKQDAVDYLTWTFMY 1798
Query: 44 EHFLQRTPSFH 12
L + P+++
Sbjct: 1799 RR-LTKNPNYY 1808
>12_02_1267 - 27448871-27450445
Length = 524
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +1
Query: 484 AVYTETDVKTIHTVCDDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYVKDEDTGD 663
AV T TD++ ++ + + E+ID ++D ND K + DED D
Sbjct: 279 AVKTNTDLRKLYIETTGKSIIVIEDIDCSVDLTAKRSND--------KKKKKSSDEDDDD 330
Query: 664 FPSQLEETSDDE 699
P E DE
Sbjct: 331 KPKLPTEQEKDE 342
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 194 LSMFDEFI-YEFMFTKRIHSVKHFHRFAAYEIDL*NNRASSLKVLFWSTVYEHFLQRTPS 18
+ ++D F ++F + + S+ F F A + +++ K L W HF+ R PS
Sbjct: 640 MHIYDLFSSFQFQHDRVLSSLNRFDSFGARLLSKLKYTSANRKKLLWDLRIHHFVVRLPS 699
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 317 RSVCAMYVQHYCKNTVGSKLSAYLDNLCSTKY 412
RS+CA+ CK + L +LDNL Y
Sbjct: 47 RSICAVLRDAECKQSTSHSLQEWLDNLKDAVY 78
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 199 SVCRMCLQFNVKMYSLQSNPLQTYFEETLGVNPVCSMDLPQC 324
S+ R+ FN +MY L ++YF+ETL + LP+C
Sbjct: 467 SMNRIVWCFNSEMYKLSVTD-ESYFKETLSLTCGTHKGLPEC 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,280
Number of Sequences: 37544
Number of extensions: 325315
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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