Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4948
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 263 KVSSIVTTAAPPFKPKRITASRQNRQSDD 177
           K+ S+V +   PF+P        NRQ D+
Sbjct: 274 KLDSLVASRTWPFRPSGTVLKDINRQVDE 302


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 270 YISRWVAHLRCRCL*APVTT*HQVGCELVHSCKQLKKKNS 389
           ++  W  H +CR   A VT  ++   +   + K+L K+N+
Sbjct: 426 FVEFWEHHFQCRYPNASVTPYNKNYTKFCSTEKRLTKQNT 465


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 451 VASLPAQILLLCGTNNQISWY 513
           V SLP  I+    T+  ++WY
Sbjct: 166 VCSLPQTIVFHLETHPNVTWY 186


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 2    MNSTT*LAYIQIIQAFNK 55
            MN  T   Y  ++QAFNK
Sbjct: 1045 MNLKTYTQYSVVVQAFNK 1062


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,919
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)