Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4947
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   2.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   3.8  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    24   5.0  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    24   5.0  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    24   6.6  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    23   8.7  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 126 VSLVSDPKTKYYNYLKPTSGLYKMA*AFYP 37
           + L+++P  KY+N+LKP+  L +     +P
Sbjct: 634 IQLLNEP-VKYHNFLKPSEALLQHLPLIHP 662


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 113 RIQRLSITIT*NPRAAYTKWLKRSIHKLVS*LAEL 9
           +IQ+L      +     TKWL ++I+ LVS L+++
Sbjct: 387 KIQKLKAAKLPSEEENTTKWLNKAINDLVSSLSKI 421


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 165 YRYNCKSCLNLVRVSLVSDPKTKYYNYLKPTSGLYKMA*AFYP*TSIM 22
           Y YN K+    V V LV +    YY++    SGLY      Y  TS+M
Sbjct: 227 YGYNMKAN---VAVGLVQNILWYYYSWSNRNSGLYWTRWPAYIVTSLM 271


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 19  SHDTSLWIERLSHF 60
           +HD S+W  R +HF
Sbjct: 260 THDNSIWASRYAHF 273


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 156 NCKSCLNLVRVSLVSDPKTKY 94
           NC  C     V++   PKTKY
Sbjct: 270 NCLECKTAKVVNITQKPKTKY 290


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 141 LNLVRVSLVSDPKTKYY 91
           + L++++ V  PKTKYY
Sbjct: 116 MTLIQIARVHIPKTKYY 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,269,569
Number of Sequences: 5004
Number of extensions: 20405
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)