Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4947
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0234 - 23805383-23805502,23805652-23805733,23805820-238060...    27   3.3  
07_03_0844 - 21971222-21971635                                         27   4.3  
01_04_0037 + 15332533-15332607,15332645-15332680,15333022-153331...    26   7.6  

>04_04_0234 -
           23805383-23805502,23805652-23805733,23805820-23806088,
           23806384-23806524,23806751-23806936,23807186-23807422,
           23807505-23807720,23807816-23808146,23808257-23808369,
           23808691-23808996,23809078-23809187,23810226-23810363,
           23811230-23811497
          Length = 838

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   YNSASHDTSLWIERLSHFV*AARG 78
           YN  S++TS+WI  LS    A RG
Sbjct: 231 YNRQSNETSIWIVELSEVHAATRG 254


>07_03_0844 - 21971222-21971635
          Length = 137

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 307 GRIGYRAPPRVLARPTNSNSFLYIYR*ISFEI 212
           G IGY AP  +   P  S + +Y Y  + FEI
Sbjct: 3   GTIGYLAPEWIAGLPITSKADVYSYGMMLFEI 34


>01_04_0037 +
           15332533-15332607,15332645-15332680,15333022-15333112,
           15333348-15333547
          Length = 133

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 253 CCSLVSLKLEGGPG 294
           CC +V L+LEGG G
Sbjct: 55  CCPIVDLELEGGAG 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,890,094
Number of Sequences: 37544
Number of extensions: 115555
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)