Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4947
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   3.0  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 79  F*VIVILSLWIRNQRNANQIKTAFTIISISYLSS 180
           F V+++ SLW+ +  N N      T+ S+ YL+S
Sbjct: 578 FTVMIMRSLWLSDWSNENAAIKKATLSSVDYLNS 611


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 176 LKYDIDIIVKAVLIWFAFRWFRIQRL 99
           +K++   I+  VLI + F W  IQ L
Sbjct: 27  MKFNFIFIITVVLISYCFTWLAIQAL 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,846,113
Number of Sequences: 27780
Number of extensions: 108506
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)