Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4946
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 1.6
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 1.6
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 2.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 3.7
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.6
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.6
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 391 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAII 567
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 568 PNMVKK 585
VKK
Sbjct: 506 SEDVKK 511
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 388 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSA 558
AK S D K + K + A+ PE SK V+ KEE S ++++ S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 415 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSAD 552
++K + KVEE ++ D K + ++ KEEK TD+K +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 443 KNQLLSLKIQKLKYKLPSLKFQKKKNL 523
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 560 AAESADPFASVALGFSSFEISATVACTSVFESSG*AAGSSTLISA 426
++ S +S++ G SS S T A S SSG ++GSS+ S+
Sbjct: 442 SSSSVSSGSSISSGSSSMSTSYTSASGSSAHSSGSSSGSSSATSS 486
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 327 VFWGYIVLFGLWYSGYLVVTNW 262
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 409 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 522
D + +DIK + E + +DSK +V TV EIS +P
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 394 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGS 546
SS DA AKS + EPA +P + + ++T + EK + TD +
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSST 947
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 403 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAK---GSADSAAIIPN 573
+ DA+AK D + E ++ + +AE+ +E K ++ K I+
Sbjct: 730 LEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRERKKASNKEKKKNAQETKQQIVQF 789
Query: 574 MVKKIDL 594
VK IDL
Sbjct: 790 KVKVIDL 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,717
Number of Sequences: 5004
Number of extensions: 30109
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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