Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4946
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 32 0.28
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 30 1.1
U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical pr... 30 1.1
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 30 1.1
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 30 1.1
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical pr... 29 3.4
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 28 4.5
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 28 4.5
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 28 4.5
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 28 4.5
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 5.9
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 28 5.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 5.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 5.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 5.9
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 28 5.9
U40424-5|AAA81461.2| 638|Caenorhabditis elegans Hypothetical pr... 27 7.9
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 391 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATDAK 540
KS E P E K ++ V +EPAA E+ K + V E KEE P++++ K
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSEEK 180
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 436 KVEEPAAQP-EDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKKIDLAPTV 606
K+EE A + E+ K ++Q+ A D S D +IP VK I PT+
Sbjct: 435 KLEEHAVKKLEEEKDKLQSAAAPEDDSPASPPMDCPASPDMVPVIPQTVKIIPTVPTI 492
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 412 AEAKSADIKVEEPAAQPEDSKTEVQ----ATVAEISKEEKPSATDAKGSADSAAIIPNMV 579
A A+SA VEE AA E ++ V+ AT A S E+P A +A+S P
Sbjct: 610 APAESAPASVEE-AAPSESTQAPVEEHKDATTAADSSHEEPKAESDAPAAESVETAPVEE 668
Query: 580 KKIDLAPT 603
K + +PT
Sbjct: 669 HKDEASPT 676
>U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical
protein T20F5.5 protein.
Length = 226
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 421 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKKIDLA 597
KSA K+ P+ + ED++ T+ A+ E S +KP T + SAD + ++ + LA
Sbjct: 66 KSASKKLRVPSKESEDTQPTKSDASQTEKS-TKKPPVTLVESSADVTTAVESISSQQQLA 124
Query: 598 P 600
P
Sbjct: 125 P 125
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = +1
Query: 388 AKSSEIPDAE---AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSA 558
+ S+ +PD + ++ +++ E P E TE A E S E P T +GS+
Sbjct: 568 SSSTILPDVQGVWSEISELPSENPITYTESPITESTAPAPETSPETAPEITPERGSSAEN 627
Query: 559 AIIP------NMVKKIDLAP 600
+ P N+ K +LAP
Sbjct: 628 ELYPTEIAPENVEKPTELAP 647
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 439 VEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKK 585
VEEP P KT + A + PSA + GS+ + N +KK
Sbjct: 235 VEEPIPPPNTRKTLLGEPPAGAASSSSPSAQSSTGSSTGTSSYQNNIKK 283
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/111 (24%), Positives = 40/111 (36%)
Frame = +1
Query: 268 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 447
+++ PA EA D A ++ A A SS +P+ A E
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562
Query: 448 PAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKKIDLAP 600
PA P +T A AE + P+A + +A +A P D P
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETPAPAPAADETP 613
>Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 457 QPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKKIDLAP 600
+ E+ + E+Q A+ S+ E PS++ S+DS + KK +AP
Sbjct: 24 EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKNIIAP 71
>Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 457 QPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKKIDLAP 600
+ E+ + E+Q A+ S+ E PS++ S+DS + KK +AP
Sbjct: 24 EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKNIIAP 71
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 121 VSLAMPVAEEKDVVPAQPIL 180
V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 121 VSLAMPVAEEKDVVPAQPIL 180
V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 121 VSLAMPVAEEKDVVPAQPIL 180
V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 121 VSLAMPVAEEKDVVPAQPIL 180
V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 391 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIP 570
K S PD + KS + E+PA+ + + EV++ KE+ P++ K + +A +
Sbjct: 1374 KKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKS-----PKEKSPASPTKKEKSPAAEEVK 1428
Query: 571 NMVKK 585
+ KK
Sbjct: 1429 SPTKK 1433
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 388 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSA 549
A+ E +A A+ A + EEP A E++ E + +EEKP A + A
Sbjct: 21 AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEA 74
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 391 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIP 570
K S PD + KS + E+PA+ + + EV++ KE+ P++ K + +A +
Sbjct: 1374 KKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKS-----PKEKSPASPTKKEKSPAAEEVK 1428
Query: 571 NMVKK 585
+ KK
Sbjct: 1429 SPTKK 1433
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 391 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIP 570
K S PD + KS + E+PA+ + + EV++ KE+ P++ K + +A +
Sbjct: 1374 KKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKS-----PKEKSPASPTKKEKSPAAEEVK 1428
Query: 571 NMVKK 585
+ KK
Sbjct: 1429 SPTKK 1433
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 391 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAKGSADSAAIIP 570
K S PD + KS + E+PA+ + + EV++ KE+ P++ K + +A +
Sbjct: 1374 KKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKS-----PKEKSPASPTKKEKSPAAEEVK 1428
Query: 571 NMVKK 585
+ KK
Sbjct: 1429 SPTKK 1433
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 407 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 508
P L N+LI WK + K ++ KY + LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232
>U40424-5|AAA81461.2| 638|Caenorhabditis elegans Hypothetical
protein C24A3.1 protein.
Length = 638
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 466 DSKTEVQATVAEISKEEKPSATDAKGSADSAAIIPNMVKKIDLA 597
D +V +SKE++ D+K + D + +M+++ DLA
Sbjct: 210 DMHNQVMDLTKNLSKEQRDREKDSKTAGDGIQRLQDMIRQQDLA 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.127 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,693
Number of Sequences: 27780
Number of extensions: 164368
Number of successful extensions: 477
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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