Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4946
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.4  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 398 PRFPMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 508
           P F ML QN+L    + + L  +  + + ++P +KF+
Sbjct: 418 PAFYMLYQNILSYFLRYKKLQPQYSQSELQMPGVKFE 454


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 101 NSKTFILNMDPCDATP-LFK 45
           NS+ F++   P DA P LFK
Sbjct: 88  NSRLFVIRGQPADALPKLFK 107


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -1

Query: 459  LSSWFFHFNISRFC 418
            +S+W +H N+++ C
Sbjct: 1674 MSTWGYHHNVNKHC 1687


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 521 GFSSFEISATVACTSVFESSG 459
           G ++  ++ TV CTS   SSG
Sbjct: 146 GGANLNLNGTVNCTSSIASSG 166


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 406 ESRMILLPGLFLRFSL 359
           ES  +LLP ++LR++L
Sbjct: 249 ESEDVLLPSVYLRWNL 264


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 398 PRFPMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 508
           P F ML Q +L    + + L  +  + + ++P +KF+
Sbjct: 418 PAFYMLYQKILSYFLRYKKLQPQYSQSELQMPGVKFE 454


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 161 TTSFSSATGIAKLTAAKAMHNSKTFILNMDPCDAT 57
           TTS SSA G   L   +   +S + +L+ +   AT
Sbjct: 414 TTSSSSAAGGEGLADRRGSESSDSVLLSPEASKAT 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.127    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,064
Number of Sequences: 438
Number of extensions: 1952
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)