Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4944
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.4  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.4  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 588 PFYKITFFFSVNTFFNYIIRLIVYNF 511
           PF+   F+FS+ +FF+++   + +NF
Sbjct: 106 PFFCFFFYFSLFSFFSFLFTSLHFNF 131


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 678 KKIVNFPINFEFNNTKKIYHVRSRAHILMPPFYKITF--FFSVNTFFNYIIRLI-VYNF 511
           K ++   I F F  TK+  +   +  + + P+YK ++  F SV   +   IR++ +Y F
Sbjct: 7   KTLIITKIFFSFKQTKRKKNKNKKRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIF 65


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 687 LYRKKIVNFPINFEFNNTKKIYHVRSRAHILMPPF--YKITFFFSVNTFF 544
           ++ K  VN+ + FEFN  K + + R    I+   F  + + FF  +  FF
Sbjct: 325 VWEKTRVNYMLIFEFNQRKSL-NWRQHLEIVGAVFFIFSLFFFLCMRNFF 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,524
Number of Sequences: 5004
Number of extensions: 47403
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)