Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4940
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.08c |mrpl39||mitochondrial ribosomal protein subunit L39...    30   0.28 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.5  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.0  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   6.0  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   8.0  

>SPBC4F6.08c |mrpl39||mitochondrial ribosomal protein subunit
           L39|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 55

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 285 APILQHVLCGSVDGFFVVRLPPLSLPRNAICKYDP 389
           A +L  +L  +  GFF VR  P + P+ A  KYDP
Sbjct: 7   ARLLVKLLSTAGTGFFYVRSRPKAAPKLAFIKYDP 41


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 610 PCTYIRWCWCWVTYRVPYKYNFD 678
           P  YI W + W+ Y  P  Y ++
Sbjct: 593 PVQYIGWWFRWIAYANPVNYGYE 615


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 191 QYRVYA*LRSLPRFTSLRDSKY*R-NVKRPTNALEPASK 78
           QY+  A L  LPR+TS +   Y R N  R  +AL+ AS+
Sbjct: 523 QYQDVATLSCLPRYTSGKTQFYHRWNASRSEDALKFASE 561


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -1

Query: 394 QPGSYLQIAFLGNDSGGRRTTKNPSTEPHKTCCSIGAHDADVNPAAA 254
           QPGS+    F    +G R     PS     TC S G     + P +A
Sbjct: 249 QPGSHKSTCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPPNSA 295


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 64  VHWKLFEAGSSAFVGRFTFR*YFESR 141
           ++WKL+E      +G  TFR YF+ +
Sbjct: 9   INWKLYEFKKINELGTSTFRYYFKGK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,921
Number of Sequences: 5004
Number of extensions: 59021
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)