Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4940
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101307-1|AAK84528.2| 294|Caenorhabditis elegans Serpentine re... 29 2.4
AF022983-8|AAB69948.3| 294|Caenorhabditis elegans Serpentine re... 29 2.4
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 29 3.2
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 29 3.2
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 29 3.2
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 28 5.7
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 28 7.5
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 28 7.5
>AF101307-1|AAK84528.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein31 protein.
Length = 294
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 641 QHQHQRMYVHGCAFVCVNTLYTYDVSLYTCKRMYSRTICFYFTTSST 501
QH+++R++ V N L+ + ++ TC Y + CF+F + T
Sbjct: 108 QHRYERIFSKTNTMVLRNYLWVFSIAFCTC--WYEISKCFFFYDTQT 152
>AF022983-8|AAB69948.3| 294|Caenorhabditis elegans Serpentine
receptor, class x protein32 protein.
Length = 294
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 641 QHQHQRMYVHGCAFVCVNTLYTYDVSLYTCKRMYSRTICFYFTTSST 501
QH+++R++ V N L+ + ++ TC Y + CF+F + T
Sbjct: 108 QHRYERIFSKTNTMVLRNYLWVFSIAFCTC--WYEISKCFFFYDTQT 152
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 222 LRRREVFETQPAAAGLTSASCAPILQHVLCGSVD 323
L R++ +G T+A PI+QH+L G D
Sbjct: 174 LANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 207
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 222 LRRREVFETQPAAAGLTSASCAPILQHVLCGSVD 323
L R++ +G T+A PI+QH+L G D
Sbjct: 158 LANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 191
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 222 LRRREVFETQPAAAGLTSASCAPILQHVLCGSVD 323
L R++ +G T+A PI+QH+L G D
Sbjct: 155 LANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 188
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 574 YVYNVFTHTNAQPCTYIRW 630
YV+N HTN Q CT + W
Sbjct: 91 YVHNHHVHTNNQNCTGVEW 109
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 666 FVWNAVRNPAPTPTYVCTWLCVCVREHIVYIRCLTLYM*AYVLAYNLFLLYNIINYGLSA 487
F N + P+P + T+ C +R ++ CL A +L + Y++ NY
Sbjct: 76 FFLNLMIKPSPCDLLLKTYFCSKIRGTFLFAFCLVTTSHAGILLERSWATYSVKNYERQG 135
Query: 486 R 484
R
Sbjct: 136 R 136
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 562 SETSYVYNVFTHTNAQPCTYIRWCWCWVTYRVPYKYN 672
SETS + + T + CT + W W T + +YN
Sbjct: 2276 SETSLFSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYN 2312
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 562 SETSYVYNVFTHTNAQPCTYIRWCWCWVTYRVPYKYN 672
SETS + + T + CT + W W T + +YN
Sbjct: 2276 SETSLFSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYN 2312
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 666 FVWNAVRNPAPTPTYVCTWLCVCVREHIVYIRCLTLYM*AYVLAYNLFLLYNIINYGLSA 487
F N + P+P + T+ C +R ++ CL A +L + Y++ NY
Sbjct: 76 FFLNLMIKPSPCDLLLKTYFCSKIRGTFLFAFCLVTTSHAGILLERSWATYSVKNYERQG 135
Query: 486 R 484
R
Sbjct: 136 R 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,843
Number of Sequences: 27780
Number of extensions: 337487
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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