Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4940
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.53 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.92 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 373 IAFLGNDSGGRRTTKNPSTEPHKT 302
           I FLGN S    TT +P+TEP  T
Sbjct: 370 IYFLGNYSLVPTTTASPTTEPSTT 393


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 331 LLFASLRCRYRETLSVSMTPVDS 399
           LLF  L+  Y ET S+  T +D+
Sbjct: 216 LLFKELQAAYEETFSLVFTKIDN 238


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 358 NDSGGRRTTKNPSTEPHKTCC 296
           NDS   R+   P+T  + TCC
Sbjct: 330 NDSERNRSPVRPATVQYDTCC 350


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 582 QCVHAHKRTAMYIHTLVLVLGYVPRSIQI 668
           Q VH HK+TA+   T    +  V + +Q+
Sbjct: 274 QPVHVHKQTAIAFRTPTYRMQQVEQPVQV 302


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 582 QCVHAHKRTAMYIHTLVLVLGYVPRSIQI 668
           Q VH HK+TA+   T    +  V + +Q+
Sbjct: 274 QPVHVHKQTAIAFRTPTYRMQQVEQPVQV 302


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 651 VRNPAPTPTYVCTWLCVC 598
           +R P  TP Y C   C C
Sbjct: 463 IRVPPGTPIYECNKRCNC 480


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = -1

Query: 181 SMHNFDRYHVLLHYATRNINET*NDRRMRSSPLRKVSNAHKVTGIAS*DS 32
           S HN  ++   +  ++ N+ E      +   P+RK+S+    + ++  +S
Sbjct: 388 SKHNTQQFTQYIPESSSNLQEKTKIDLLEIPPIRKISDCSTTSSLSGDES 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,286
Number of Sequences: 438
Number of extensions: 4586
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)