Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4937
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    31   0.64 
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    31   0.64 
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    31   0.64 
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    28   5.9  

>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 329  AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 508
            A  P   A P+ + A     I  A    V A  E +        + S  DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563

Query: 509  ESRDGDAVHG 538
             S +G++ +G
Sbjct: 1564 GSENGESGNG 1573


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 329  AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 508
            A  P   A P+ + A     I  A    V A  E +        + S  DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601

Query: 509  ESRDGDAVHG 538
             S +G++ +G
Sbjct: 1602 GSENGESGNG 1611


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 329  AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 508
            A  P   A P+ + A     I  A    V A  E +        + S  DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563

Query: 509  ESRDGDAVHG 538
             S +G++ +G
Sbjct: 1564 GSENGESGNG 1573


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 323 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 421
           + AAAP   A+P    AP A ++AP   VL +A
Sbjct: 55  VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,312
Number of Sequences: 27780
Number of extensions: 173239
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)