Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4931
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   3.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   6.8  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 183 TIPPPLSPLQTDVPSLYPAQ*VYSDVNLTKNSL*DLMQVSVSTTGISTRLSSSVATPVSS 4
           +IP PL+P  +D  SLYP    +S V   KN    +  ++V    I + L  ++   +SS
Sbjct: 534 SIPKPLTPKPSDSNSLYPLP--HSKVGRRKN----IPAITVPPPSILSILRKNIGKDISS 587


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 516 QHSSYFSPIEFDLMSAGGRNDVSN 445
           QH S+ SP   DL S  G+NDV +
Sbjct: 747 QHQSFTSPPFSDLSSEIGKNDVQS 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,214
Number of Sequences: 5004
Number of extensions: 73617
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)