Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4931
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667... 31 1.0
03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601... 31 1.0
02_04_0610 + 24335153-24337724,24337835-24338256 29 3.1
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 29 4.1
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 29 4.1
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 29 5.4
01_04_0141 + 16618916-16619265,16619400-16619418 29 5.4
06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706 28 7.1
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540... 28 9.4
01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139 28 9.4
>08_02_1605 -
28166338-28166418,28166496-28166567,28166655-28166771,
28166846-28166956,28167077-28167252,28167340-28167421,
28167662-28167808,28167887-28168252,28168558-28168741,
28169104-28169213,28169452-28169508,28169589-28169600,
28169899-28169961,28170010-28170057,28170166-28170246,
28170326-28170389,28170661-28170686,28170782-28170868,
28170942-28170969,28171194-28171255,28171364-28171576,
28171667-28171774,28171948-28172022,28172136-28172249,
28172597-28172644,28172688-28172767,28172974-28173049,
28173287-28173427,28173685-28173762,28175100-28175204,
28177061-28177147,28177287-28178579
Length = 1463
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 171 VAEWSSSLARAGTSGAWCRSPWPG 242
V++W+SSLA+ WCR W G
Sbjct: 217 VSQWASSLAQVAYIMGWCREGWRG 240
>03_03_0137 -
14759337-14759508,14759616-14759813,14759917-14760116,
14760197-14760310,14760386-14760572,14760984-14761225,
14762326-14762424,14762505-14762836,14762931-14763039
Length = 550
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 165 TVVAEWSSSLARAGTSGAWCRSPWPGRTNADVTPAI 272
TVV E SS+ +G GAW R W G + V PA+
Sbjct: 36 TVVGEGSSTSPGSG-GGAWWREAWVGARSRAVAPAL 70
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 168 VVAEWSSSLARAGTSGAWCRSPWPGRTNA 254
V++ W++S+ +G WC PGR A
Sbjct: 44 VLSNWNTSIHLCSWNGVWCSPKHPGRVTA 72
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 240 LATESDTRPLRYQLSPNLKTIPPPLSPLQTDVPSLYPAQ*VYSDV 106
LAT S P++YQ + N++ P P+ S PA + D+
Sbjct: 722 LATTSPAEPVKYQETKNVRNETKPADPMSMMKASQVPAMLQFKDM 766
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 39 WWRCPWLTLKPASGLTANSSSDLHRSTLTAPDIE---MEHRSVTATVVAEWSSSLARAGT 209
WW C LT LT + ++T P+IE +E R++++T +A S R
Sbjct: 157 WWACIALTSLLIRTLTVPLLLNQMKATAMRPEIEAINLEMRTISSTRIAGNEKSSTRVTD 216
Query: 210 SGAWCRSP 233
G+ P
Sbjct: 217 EGSMSTDP 224
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 179 MVFKFGESWYLRGLVSLSVARQNECRCDPSHYVVFSDLAKFLPWLQENLF 328
+V S+ L GLV +SV N P H++ DL PW++ F
Sbjct: 137 IVLVAARSYGLTGLVRISVKEHNVIESKPDHFL--DDLRLHNPWVELKQF 184
>01_04_0141 + 16618916-16619265,16619400-16619418
Length = 122
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 CAGYRDGTSVCNGDS-GGGMVFKFGESWYLRGLVSLSVARQNEC 253
C G+RDG C+G GGG + R S +ARQ EC
Sbjct: 45 CNGWRDGGDRCDGQRLGGGDCDSGADQCDGRRGTSSRMARQREC 88
>06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706
Length = 320
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 66 KPASGLTANSSSDLHRSTLTAPDIEMEHR--SVTATVVAEWSSSLAR 200
+PAS +A + D HR TL P + R V A+++A W L +
Sbjct: 116 RPASAPSAPPAQDRHRITLDKPKAKGRGRGGKVQASLLAPWELDLGK 162
>02_01_0722 +
5405550-5405810,5406654-5407399,5407575-5408046,
5408129-5408296,5408301-5408418,5408845-5409056,
5409165-5409287,5409395-5409880,5409976-5410401
Length = 1003
Score = 27.9 bits (59), Expect = 9.4
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = -2
Query: 274 VMAGVTSAFVLPGHGERHQAPEVPALAKLEDHSATTVAVTDRCSI-----SISGAVSVLR 110
V A V VL G+ Q EVP +++E H + T + C + +I GA+SV
Sbjct: 743 VSANVEGKLVLVGNKRLMQEFEVPISSEVEGHMSETEELARTCVLVAIDRTICGALSV-- 800
Query: 109 CKSDEEFAVRPDAGFSVNH 53
SD ++P+AG ++++
Sbjct: 801 --SD---PLKPEAGRAISY 814
>01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139
Length = 301
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 128 AGYRDGTSVCNGDSGGG 178
AG+RD T +C+G GGG
Sbjct: 24 AGHRDTTMLCDGGDGGG 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,476,382
Number of Sequences: 37544
Number of extensions: 500541
Number of successful extensions: 1560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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