Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4931
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.2  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 210 SGAWCRSPWPGRTNADV 260
           SG+   SP+PG T AD+
Sbjct: 353 SGSKANSPFPGSTEADI 369


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 248 ECRCDPSHYVVFSDLAK 298
           ECRCDP ++    D  K
Sbjct: 295 ECRCDPGYFRAEKDPKK 311


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 595 YKRLQCVSNHPLWEIRTMFQLHRKIAIPPLSILTDRPTRQYF 720
           Y R  C+S    +   T      K A+PPLS+      R++F
Sbjct: 272 YLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFF 313


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 289  VAEHYVMAGVTSAFVLPGHGERHQAPEV 206
            VAE   + G     V+PG+G+R   PE+
Sbjct: 1858 VAETTFVGG-NQGNVVPGNGDRSDRPEL 1884


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 289  VAEHYVMAGVTSAFVLPGHGERHQAPEV 206
            VAE   + G     V+PG+G+R   PE+
Sbjct: 1854 VAETTFVGG-NQGNVVPGNGDRSDRPEL 1880


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 509 VVISVQLSSTSCLQGGETMYP 447
           V I   L + + L GG TMYP
Sbjct: 62  VDIRKDLYANTVLSGGTTMYP 82


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 633 GDKDHVSIA*ENRYSSLKYPNRSTNETVFSSDPPF*SLNSFSRH 764
           G  +++S    N+ SS    N S   ++ S  PP  + +  +RH
Sbjct: 604 GSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLTESLLNRH 647


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,878
Number of Sequences: 438
Number of extensions: 5185
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)