Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4929
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    34   0.018
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   8.1  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -3

Query: 225 RSASTRPDSRESKANAHLPSNYRESRVRGAGGQGLSEGK 109
           RS STR +   S A  H P   RE R RG G QG   G+
Sbjct: 331 RSMSTRTEFASSMATMHEPRARREKRFRGQGFQGYFAGE 369


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 431 SAELTLVSMVLINGAAPVSSARIRQVSPDGSLEKRF 324
           SAEL    ++L  GA  V      ++S +GSL  RF
Sbjct: 748 SAELKGEGVLLCGGAVAVRKLSGGKISVEGSLSNRF 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,477
Number of Sequences: 5004
Number of extensions: 40059
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)