Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4929
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518 31 0.51
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 29 2.1
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 29 2.7
04_03_0641 + 18261332-18262423 29 3.6
12_01_0285 + 2120130-2121204,2122842-2123116 28 6.3
11_01_0281 + 2086674-2087652,2089200-2089483 27 8.3
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 27 8.3
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 27 8.3
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 27 8.3
>01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518
Length = 429
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 447 KMGMRREAVQRGRVPPSQAPGLGLPGQFTLGNGDPGAGLNNHP 575
K G V +G V + PG G PG T+G G G G+N P
Sbjct: 116 KPGGTSVGVGKGGVGVNVQPGYGKPGGTTVGVGKGGVGVNVQP 158
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 447 KMGMRREAVQRGRVPPSQAPGLGLPGQFTLGNGDPGAGLNNHP 575
K G V +G V + PG G PG T+G G G G+N P
Sbjct: 139 KPGGTTVGVGKGGVGVNVQPGYGKPGGTTVGVGKGGVGVNVKP 181
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 471 VQRGRVPPSQAPGLGLPGQFTLGNGDPGAGLNNHP 575
V +G V + PG G PG T+G G G G+N P
Sbjct: 78 VGKGGVGVNVKPGYGKPGGTTVGVGKGGVGVNVKP 112
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 447 KMGMRREAVQRGRVPPSQAPGLGLPGQFTLGNGDPGAGLNNHP 575
K G V +G V + PG G PG ++G G G G+N P
Sbjct: 93 KPGGTTVGVGKGGVGVNVKPGYGKPGGTSVGVGKGGVGVNVQP 135
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 252 SGLYPSRRNRSASTRPDSRESKANAHLPSNYRESRVRG 139
S L S NR+ RPDS ++ LP + R S + G
Sbjct: 160 SNLDSSPGNRTVQERPDSDSAQVKGSLPDHPRSSNIEG 197
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 413 PVSVLQTKKMSQNGHEKRSCPKRSSASIAGARPGTPWP 526
PVS + T G EK S R+ S PG WP
Sbjct: 336 PVSTVDTAGAPLEGEEKASAANRAPVSGGRRSPGLKWP 373
>04_03_0641 + 18261332-18262423
Length = 363
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 345 VRRNLTYSCRGNRSCPIDQHHRNQC-QFCRLRKCLKMGMRR 464
V+ L SCR PID+ HR C + R+ C + RR
Sbjct: 234 VKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRR 274
>12_01_0285 + 2120130-2121204,2122842-2123116
Length = 449
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 234 RRNRSASTRPDSRESKANAHLPSNYRESRVRGAGGQGLSEGKAP 103
+ + S TRP+SR+ K A P+N AGG G + G+ P
Sbjct: 106 KNSNSVWTRPNSRKGKKKAKQPANAL------AGGSGGANGRLP 143
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 234 RRNRSASTRPDSRESKANAHLPSNYRESRVRGAGGQ 127
+ + S TRP+SR+ K A P+N GA G+
Sbjct: 109 KNSNSVWTRPNSRKGKKKAKQPANALAGGSAGANGR 144
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 234 RRNRSASTRPDSRESKANAHLPSNYRESRVRGAGGQ 127
+ + S TRP+SR+ K A P+N GA G+
Sbjct: 107 KNSNSVWTRPNSRKGKKKAKQPANALAGGSAGANGR 142
>05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 241 IKARMWSAWSA---VTSPPGNTTASSLVRAANRF 333
I RMWS W A V+S G TASS+ A ++
Sbjct: 1028 IMLRMWSNWRAVASVSSSDGEETASSVAAAHGKW 1061
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 265 WSAVTSPPGNTTASSLVRAANRFSRDPSGE 354
W+A TSPPG+ S R R P GE
Sbjct: 21 WAATTSPPGSVGGESAARHRRALPR-PHGE 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,184
Number of Sequences: 37544
Number of extensions: 343123
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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