Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4929
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...   122   3e-30
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...   122   3e-30
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...   107   8e-26
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...   101   4e-24
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    75   7e-16
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    57   1e-10
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    46   4e-07
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score =  122 bits (293), Expect = 3e-30
 Identities = 47/75 (62%), Positives = 63/75 (84%)
 Frame = +3

Query: 261 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRK 440
           C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR  +SC ID+  RN+CQ+CR +K
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169

Query: 441 CLKMGMRREAVQRGR 485
           CL MGM+REAVQ  R
Sbjct: 170 CLAMGMKREAVQEER 184


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score =  122 bits (293), Expect = 3e-30
 Identities = 47/75 (62%), Positives = 63/75 (84%)
 Frame = +3

Query: 261 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRK 440
           C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR  +SC ID+  RN+CQ+CR +K
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169

Query: 441 CLKMGMRREAVQRGR 485
           CL MGM+REAVQ  R
Sbjct: 170 CLAMGMKREAVQEER 184


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score =  107 bits (257), Expect = 8e-26
 Identities = 45/83 (54%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
 Frame = +3

Query: 246 GQNVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTY-SCRGNRSCPIDQHHRNQCQ 422
           G  V C VCGDK+SG HYG  +CEGCK FF+RS+++ + Y  C  N+ C I + +RN+CQ
Sbjct: 62  GTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQ 121

Query: 423 FCRLRKCLKMGMRREAVQRGRVP 491
           +CRL+KC+ +GM R+AV+ GRVP
Sbjct: 122 YCRLKKCIAVGMSRDAVRFGRVP 144



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 266 GLR*QVLRETLRPVHL*GLQIVFQEIRPEKPDVFVQRKQELP 391
           GLR   L E +       LQ V  +  P+ PD+  +  +++P
Sbjct: 352 GLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIP 393


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score =  101 bits (243), Expect = 4e-24
 Identities = 39/71 (54%), Positives = 51/71 (71%)
 Frame = +3

Query: 261 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRK 440
           C+VCGD++SG HY   TCEGCK FF+RS+ +N  Y C+   +C ID + R +CQ CRL+K
Sbjct: 187 CLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKK 246

Query: 441 CLKMGMRREAV 473
           CL +GMR E V
Sbjct: 247 CLTVGMRPECV 257


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 74.5 bits (175), Expect = 7e-16
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +3

Query: 312 CEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAV 473
           CEGCK FF+RS+ +N  Y C+   +C ID + R +CQ CRL+KCL +GMR E +
Sbjct: 1   CEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECM 54


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
 Frame = +3

Query: 270 CGDKSSGKHYGQFTCEG----CKSFFKRSVRRNLTYS-CRGNRSCPIDQHHRNQCQFCRL 434
           C   SS    GQ T EG     + FF+RS+++ + Y  C  N+ C I + +RN+CQ+CRL
Sbjct: 18  CSSGSSSDSDGQ-TDEGFVGDSQGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 76

Query: 435 RKCLKMGMRRE 467
           +KC+ +GM R+
Sbjct: 77  KKCIAVGMSRD 87


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +3

Query: 246 GQNVECVVCGDKSSGKHYGQFTCEGCK 326
           G  V C VCGDK+SG HYG  +CEGCK
Sbjct: 4   GTTVLCRVCGDKASGFHYGVHSCEGCK 30


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 492 PSQAPGLGLPGQ 527
           P + PG GLPGQ
Sbjct: 22  PKEEPGPGLPGQ 33


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 492 PSQAPGLGLPGQ 527
           P + PG GLPGQ
Sbjct: 22  PKEEPGPGLPGQ 33


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 492 PSQAPGLGLPGQ 527
           P + PG GLPGQ
Sbjct: 22  PKEEPGPGLPGQ 33


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 231 RNRSASTRPDSRESKANAHLPSNYRES 151
           R+R  + R  SRE K  + L +NY  S
Sbjct: 66  RSRDRTERERSREPKIISSLSNNYNYS 92


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 222  SASTRP-DSRESKANAHLPSNYRESRVRGAGG 130
            + STR  + + SK  A +P+N   +R+   GG
Sbjct: 1290 TGSTRVGEGQSSKVAAQVPTNRVPARITSFGG 1321


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 222  SASTRP-DSRESKANAHLPSNYRESRVRGAGG 130
            + STR  + + SK  A +P+N   +R+   GG
Sbjct: 1286 TGSTRVGEGQSSKVAAQVPTNRVPARITSFGG 1317


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 314 TSELAVVFPGGLVTADHALHILA 246
           TSEL+  F G   + D+A+ + A
Sbjct: 475 TSELSATFKGLKPSTDYAIQVRA 497


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 179 LIFPPTTAKAEFEGRVVRA 123
           LIFPP  AK  + G  + A
Sbjct: 466 LIFPPDIAKRLWLGETIEA 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,750
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)