Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4928
         (513 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069397-1|AAL39542.1|  669|Drosophila melanogaster LD10094p pro...    97   1e-20
AE013599-2360|AAM70892.1|  669|Drosophila melanogaster CG5935-PB...    97   1e-20
AE013599-2358|AAF57943.2|  663|Drosophila melanogaster CG5935-PA...    97   1e-20
AE013599-2357|AAM70891.1|  667|Drosophila melanogaster CG5935-PC...    97   1e-20

>AY069397-1|AAL39542.1|  669|Drosophila melanogaster LD10094p
           protein.
          Length = 669

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = -2

Query: 356 PTDKKAKRP-PTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKAT 180
           P  KK K+  PTDE+I+ YVK+IL+ ANLE+ITMKTVCKQVY+ YPDFDL  KKDFIKAT
Sbjct: 603 PLTKKGKQAFPTDEQIRGYVKEILDKANLEEITMKTVCKQVYAKYPDFDLTDKKDFIKAT 662

Query: 179 VKSCI 165
           VK+ I
Sbjct: 663 VKALI 667


>AE013599-2360|AAM70892.1|  669|Drosophila melanogaster CG5935-PB,
           isoform B protein.
          Length = 669

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = -2

Query: 356 PTDKKAKRP-PTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKAT 180
           P  KK K+  PTDE+I+ YVK+IL+ ANLE+ITMKTVCKQVY+ YPDFDL  KKDFIKAT
Sbjct: 603 PLTKKGKQAFPTDEQIRGYVKEILDKANLEEITMKTVCKQVYAKYPDFDLTDKKDFIKAT 662

Query: 179 VKSCI 165
           VK+ I
Sbjct: 663 VKALI 667


>AE013599-2358|AAF57943.2|  663|Drosophila melanogaster CG5935-PA,
           isoform A protein.
          Length = 663

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = -2

Query: 356 PTDKKAKRP-PTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKAT 180
           P  KK K+  PTDE+I+ YVK+IL+ ANLE+ITMKTVCKQVY+ YPDFDL  KKDFIKAT
Sbjct: 597 PLTKKGKQAFPTDEQIRGYVKEILDKANLEEITMKTVCKQVYAKYPDFDLTDKKDFIKAT 656

Query: 179 VKSCI 165
           VK+ I
Sbjct: 657 VKALI 661


>AE013599-2357|AAM70891.1|  667|Drosophila melanogaster CG5935-PC,
           isoform C protein.
          Length = 667

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = -2

Query: 356 PTDKKAKRP-PTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKAT 180
           P  KK K+  PTDE+I+ YVK+IL+ ANLE+ITMKTVCKQVY+ YPDFDL  KKDFIKAT
Sbjct: 601 PLTKKGKQAFPTDEQIRGYVKEILDKANLEEITMKTVCKQVYAKYPDFDLTDKKDFIKAT 660

Query: 179 VKSCI 165
           VK+ I
Sbjct: 661 VKALI 665


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,010
Number of Sequences: 53049
Number of extensions: 178599
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)