Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4928
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    27   6.0  
U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in b...    27   7.9  
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    27   7.9  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     27   7.9  

>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 200 SCVRGQSPGSGCRPACKQ 253
           +CV+ Q P S C+P C+Q
Sbjct: 143 TCVQQQQPASQCQPQCQQ 160


>U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 11 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 203 CVRGQSPGSGCRPACKQ 253
           C++ Q P S C+PAC+Q
Sbjct: 371 CIQQQQPISQCQPACQQ 387


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 290 LEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVK 174
           L GA      M++VC  + SH   FD++     + A VK
Sbjct: 646 LIGAMFPSERMRSVCSSIESHLDPFDVSLLSPLLAANVK 684


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 290 LEGANLEQITMKTVCKQVYSHYPDFDLAHKKDFIKATVK 174
           L GA      M++VC  + SH   FD++     + A VK
Sbjct: 646 LIGAMFPSERMRSVCSSIESHLDPFDVSLLSPLLAANVK 684


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,190,390
Number of Sequences: 27780
Number of extensions: 88742
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)