Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4925
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   4.9  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   8.6  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = -2

Query: 603  GCRLGKTNYCG--EPWGRPMPSSERACVT 523
            GC  G    CG  EPWG P+      C T
Sbjct: 1729 GCSSGALYECGSFEPWGTPLDYLSAGCPT 1757


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 499 LLSSQHFESLSTDQFFFSKLIIFNCAIFDYV*YNLNM 389
           LL+S+ FES   +  + S+++ F  +    + YNLN+
Sbjct: 508 LLASESFESCILNASYCSEMLFFQTSSGKLISYNLNV 544


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 212 YSCHLKTILFPRIDVSSFCEFIFHTMSIID 123
           ++CH   +L  RI  S     IFHT  ++D
Sbjct: 213 FACHQYLVLGGRITDSMVLVIIFHTWYVLD 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,490
Number of Sequences: 5004
Number of extensions: 62735
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)