Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4920
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911...    29   2.7  

>08_02_0216 +
           14390739-14390847,14390983-14391017,14391112-14391153,
           14391253-14391346,14391476-14391672,14392407-14392424,
           14392938-14393182,14393300-14393657,14393741-14394316,
           14395172-14395447
          Length = 649

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 431 ERVGELTGS*PVDVANTNPSKSSASQNLPPDLKRSPLRRAGE 556
           E VG L    PV +  +  S+ SAS++  PD +   LR+AGE
Sbjct: 63  ETVGSLKE--PVGIVFSEESRESASKSTEPDSQEFLLRKAGE 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,140,333
Number of Sequences: 37544
Number of extensions: 313112
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)