Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4918
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    27   1.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   2.5  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    26   2.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.7  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 136 LNRNIDNVVTISPKKKQISTNNFL 65
           L + ++NV+ + PK +Q+ST  F+
Sbjct: 43  LFKRVENVIEMEPKTEQMSTGRFI 66


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 154 AAFRSNLNRNIDNVVTISPKKKQISTNNFLQYQSTYTIFFKKPSDHLASLI 2
           + F S +N  +D  + ISPK+  +ST     ++++ ++F  +    L  L+
Sbjct: 98  SGFGSTVNGFLDQALQISPKEDDVSTPT---HEASSSVFLNRHERQLLELV 145


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 175 YIHKLDSAAFRSNLNRNIDNVVTISPKKKQISTNNFLQY 59
           Y+ K  S ++ +N    ++  + +  KKK  S   FLQY
Sbjct: 176 YVKKASSGSWGANDIITLEKEIAMFKKKKNWSDEQFLQY 214


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 110 NNFTKKKANIYQQLFTIPINVYYFF*KAVGSSRF 9
           N+F KK + IYQ+  +   N+YY   +A G++R+
Sbjct: 74  NSFLKKISLIYQKYISPKQNLYY---EATGTARY 104


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 115  VVTISPKKKQISTNNFLQYQSTY 47
            +V +    KQ+ T NFL+Y+ T+
Sbjct: 1247 IVLLGSCIKQLKTENFLEYKVTF 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,923
Number of Sequences: 5004
Number of extensions: 22520
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)