Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4918
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360...    27   4.2  
05_07_0253 + 28692309-28692643,28693530-28693569,28693709-286937...    26   9.7  
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    26   9.7  

>01_01_0489 +
           3608720-3608811,3609326-3609431,3609518-3609581,
           3609905-3609965,3610017-3610144,3610236-3610385,
           3610537-3610791,3611060-3611265,3611469-3611696,
           3612161-3612259
          Length = 462

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 169 HKLDSAAFRSNLNRNIDNVVTISPKKKQISTNNFLQYQST 50
           HK+++   R+   R +   + I P +KQ S+ NF +++ T
Sbjct: 356 HKINAYRDRAAERRILHRGIGIGPGQKQSSSTNFYEHEET 395


>05_07_0253 +
           28692309-28692643,28693530-28693569,28693709-28693777,
           28694219-28694273,28694796-28694871,28695565-28695702,
           28697361-28697388,28698177-28698413,28698516-28698665,
           28698726-28698734
          Length = 378

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 85  ISTNNFLQYQSTYTIFFKKPSDHLASLI 2
           + T+  +Q+   + IFF KP D L S++
Sbjct: 107 VGTDARIQWLLEFVIFFSKPDDELMSVL 134


>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 190 ISTVAYI-HKLDSAAFRSNLNRNIDNVVTISPKKKQISTNNFLQYQSTYTIFFKKPSDHL 14
           I T+A++ H++ S     + N NI +   ++P +K+     FLQ+ +  T   + P D++
Sbjct: 111 IITIAFLQHRVGSKCSPGDFNANIKD---LNPDQKEKLRIWFLQHYNVLTDIIELPKDYV 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,418,789
Number of Sequences: 37544
Number of extensions: 117447
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)