Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4918
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 163 VYECKQRLKCDL 198
           +YEC +R  CD+
Sbjct: 471 IYECNKRCNCDI 482


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 196 NHISTVAYIHKLDS 155
           NH+  + Y+ KLD+
Sbjct: 102 NHLKQLGYVQKLDT 115


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 95  KKANIYQQLFTIPINVYYFF 36
           + + I   LF + INV+Y+F
Sbjct: 425 RASRIVFPLFFLAINVFYWF 444


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 57  WYCKKLLVDICFFFGEIVTTLS 122
           ++ ++ +VDI    GE+ T+LS
Sbjct: 494 YFIQEGIVDIVMANGEVATSLS 515


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 57  WYCKKLLVDICFFFGEIVTTLS 122
           ++ ++ +VDI    GE+ T+LS
Sbjct: 462 YFIQEGIVDIVMANGEVATSLS 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,378
Number of Sequences: 438
Number of extensions: 1543
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)