Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4917
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   2.8  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    26   6.4  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    26   6.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.5  

>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  RRLKLSETTDTTGISKDRVHHILSEELNMKK 144
           +RLKL E T+   + ++ ++HI    +N KK
Sbjct: 186 KRLKLEEDTNDPAVEQEVINHISEMVVNAKK 216


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   TPEMVVKVHVMVLTDRRLKLSETT-DTTGISKDRVHHILSEELNMKKSSARWVPRLLTHD 183
           T ++ + +H   +  R LK      D TG S  R+    +E   + +SSA WVP + T +
Sbjct: 23  TTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVP-VYTDE 81

Query: 184 QKRI 195
            K I
Sbjct: 82  TKEI 85


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 434 YLPKGQTINGEYYANLLDNFHQCIQQKRPDLAKNKSSSAKTALGFTHVL 580
           Y+P+G+ I  E    LLD   + + +K   L K K ++    LG  + L
Sbjct: 61  YVPEGEVIGVEPSQELLDKAEEAL-RKEETLKKEKINNCSFRLGSIYKL 108


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 542 SSAKTALGFTHVLKLWQKSTN*SMILLSHPPYSPDIAPSDF 664
           SS  TA+ FT  L +  K      I L+HPPY  D+A + F
Sbjct: 719 SSKHTAVIFTSDLLMVLK------IALNHPPYFDDLATTTF 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,176
Number of Sequences: 5004
Number of extensions: 67014
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)