Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4917
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581           33   0.24 
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    31   0.95 
04_03_0971 - 21340829-21340996,21341169-21341222,21341317-213415...    29   2.9  
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754...    29   5.1  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   6.7  

>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
          Length = 349

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 738 ERL*LHPFVVNFCPPKKVLSLGNKWKSDGAISGE*GGWDSKIILQFVDF 592
           ER+ +HP   +  PP   L LG +  +  A+ G  GG + K+   F DF
Sbjct: 100 ERVPVHPIGSSAAPPPDALLLGGENDAAAAVDGGGGGKEVKLDFLFADF 148


>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 451 LTFRKV--NYHQDPICIPKDESHHFSGRLYSHGFFGAGHRDCVHCFD*IF 308
           LTF+++  NY ++P C P+     F G    +G FG+ H D +  ++ +F
Sbjct: 745 LTFKEIVNNYKREPQCKPEVFRSIFVGSTNRNGGFGSRHVDIIVFYNQVF 794


>04_03_0971 -
           21340829-21340996,21341169-21341222,21341317-21341540,
           21341936-21342239,21342341-21342439,21343177-21343314,
           21343412-21343534,21343623-21343721
          Length = 402

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 629 GGTAKSYFNSLIFAIALTHV*TLALSWRKMIYFSPN 522
           GGT K  FN+   A AL    T  L W+++I   P+
Sbjct: 358 GGTPKGIFNATSGATALLRPPTATLQWQQLIILVPS 393


>10_07_0195 +
           13972656-13972970,13973518-13973848,13975312-13975463,
           13975573-13976280,13976424-13976615,13977264-13977425
          Length = 619

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +3

Query: 138 EKVIGPLGAAIAYARSKEDSGAKVKRMSGPFQS-NNADFLRRFVTIDETWVRYYTPE--- 305
           E VIGP GA I Y R    S   +K +     S          V I E  ++ +  E   
Sbjct: 515 EAVIGPTGARIDYIRQASGSSVVIKDLDDSAMSIEITGSAATDVQIAEQLIKNFMAEAAA 574

Query: 306 -SKIQSKQWTQSRCPAPKKP 362
            S   S  +  S  PAP+ P
Sbjct: 575 ASPDHSYDFIPSHLPAPRSP 594


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 165 AIAYARSKEDSGAKVKRMSGPFQSNNA----DFLRRFVTIDETWVRYYTPESKIQSKQWT 332
           A  + R     G  V  + GP    +     +F R++V +D+TW+      S +Q  QW 
Sbjct: 236 ACLWERQIGGRGDDVNELYGPSSCKDLLTLYNFNRQYVNMDKTWLSKQAEMSTLQLGQWK 295

Query: 333 QS 338
            S
Sbjct: 296 PS 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,180,224
Number of Sequences: 37544
Number of extensions: 413880
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)