Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4917
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    75   5e-14
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    60   2e-09
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    60   2e-09
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    60   2e-09
U13071-3|AAA20673.1|  286|Caenorhabditis elegans Hypothetical pr...    37   0.017
AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    34   0.12 
AF016686-14|AAB66232.1|  288|Caenorhabditis elegans Hypothetical...    30   2.0  
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 51/138 (36%), Positives = 69/138 (50%)
 Frame = +2

Query: 296 HARIKNSIKTVDAIAMPSSKKAMAVKSAGKVMAFVFWDADGILMIVYLPKGQTINGEYYA 475
           H R K  +  V+  A P  K  +  K   KV+  ++WD+ G++    LP G TIN + Y 
Sbjct: 134 HTRKKQWVP-VEEHAEPDLKGELHEK---KVLLSIWWDSMGVIFRELLPDGATINADLYC 189

Query: 476 NLLDNFHQCIQQKRPDLAKNKSSSAKTALGFTHVLKLWQKSTN*SMILLSHPPYSPDIAP 655
             L+      Q  RP  +K        A   T  LK  QK     + +L HPPYSPD+AP
Sbjct: 190 IQLEKVVHAHQLHRPRGSKLLLLH-DNARPHT-ALKTRQKLQTLGIEVLPHPPYSPDLAP 247

Query: 656 SDFHLFPKLKTFLGGQKF 709
           +D+HLF  L+  L GQKF
Sbjct: 248 TDYHLFRSLQNHLAGQKF 265


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
 Frame = +2

Query: 383 KVMAFVFWDADGILMIVYLPKGQTINGEYYANLLDNFHQCIQQKRPDLAKNKSSSAKTAL 562
           K+M  V+W   G +    LP  +TI  +YY   LD   +    K   L     ++     
Sbjct: 190 KIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLYFLHDNARP--- 246

Query: 563 GFTHVLK-LWQKSTN*SMILLSHPPYSPDIAPSDFHLFPKLKTFLGGQKF 709
              HV K  +QK  +    +L HPPYSPD+AP+D+HLF  L  ++  ++F
Sbjct: 247 ---HVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQF 293


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
 Frame = +2

Query: 383 KVMAFVFWDADGILMIVYLPKGQTINGEYYANLLDNFHQCIQQKRPDLAKNKSSSAKTAL 562
           K+M  V+W   G +    LP  +TI  +YY   LD   +    K   L     ++     
Sbjct: 165 KIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLYFLHDNARP--- 221

Query: 563 GFTHVLK-LWQKSTN*SMILLSHPPYSPDIAPSDFHLFPKLKTFLGGQKF 709
              HV K  +QK  +    +L HPPYSPD+AP+D+HLF  L  ++  ++F
Sbjct: 222 ---HVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQF 268


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
 Frame = +2

Query: 383 KVMAFVFWDADGILMIVYLPKGQTINGEYYANLLDNFHQCIQQKRPDLAKNKSSSAKTAL 562
           K+M  V+W   G +    LP  +TI  +YY   LD   +    K   L     ++     
Sbjct: 190 KIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLYFLHDNARP--- 246

Query: 563 GFTHVLK-LWQKSTN*SMILLSHPPYSPDIAPSDFHLFPKLKTFLGGQKF 709
              HV K  +QK  +    +L HPPYSPD+AP+D+HLF  L  ++  ++F
Sbjct: 247 ---HVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQF 293


>U13071-3|AAA20673.1|  286|Caenorhabditis elegans Hypothetical
           protein T22F7.4 protein.
          Length = 286

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +2

Query: 611 MILLSHPPYSPDIAPSDFHLFPKLKTFLGGQKFTTNG 721
           M+LL +PPYS   APS++  F  +   LGG+ F T+G
Sbjct: 30  MVLL-YPPYSQGTAPSEYWSFSDVARVLGGRTFNTHG 65


>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
 Frame = +2

Query: 386 VMAFVFWDADGILMIVYLPKGQTINGEYYANLLDNFHQCIQQKRPDLAKNK-SSSAKTAL 562
           +M F    A+G   ++++P+G  +NG  Y ++L    + +   +    K K +     A 
Sbjct: 256 IMVFAGITANGKTPLIFVPQGIKVNGNNYLDMLKT--ELMPWVKKHFKKTKWTFQQDGAP 313

Query: 563 GFTHV-LKLWQKSTN*SMILLSH-PPYSPDIAPSDFHLFPKLK 685
              H  ++ W +S     I  +  PP SPD+ P D+ ++  L+
Sbjct: 314 AHKHKNVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLE 356


>AF016686-14|AAB66232.1|  288|Caenorhabditis elegans Hypothetical
           protein R07C3.2 protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 73  TTDTTGISKDRVHHILSEELNM 138
           T +T  IS DRVH+I S+ LNM
Sbjct: 105 TVETLQISVDRVHYIFSKNLNM 126


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 34   VMVLTDRRLKLSETTDTTGI 93
            V+++TDRRL LS+ TD  G+
Sbjct: 3100 VLIITDRRLVLSKRTDMMGV 3119


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 34   VMVLTDRRLKLSETTDTTGI 93
            V+++TDRRL LS+ TD  G+
Sbjct: 3127 VLIITDRRLVLSKRTDMMGV 3146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,494,327
Number of Sequences: 27780
Number of extensions: 370401
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)