Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4917
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    77   1e-16
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          44   2e-06
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          42   6e-06
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.98 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
 Frame = +2

Query: 305 IKNSIKTVDAIAMPSSKKAMAVKSAG----KVMAFVFWDADGILMIVYLPKGQTINGEYY 472
           + N+IK   + + P  + A     AG    KV+  V+WD  GI+    LP  +TIN   Y
Sbjct: 158 VYNNIKRKRSWSRPR-EPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLPPNRTINSVVY 216

Query: 473 ANLLDNFHQCIQQKRPDLAKNKSSSAKTALGFTHV-LKLWQKSTN*SMILLSHPPYSPDI 649
              L   +  +++KRP+L   K           H  L   QK       +L HPPYSPD+
Sbjct: 217 IEQLTKLNNAVEEKRPELTNRKGVVFHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDL 276

Query: 650 APSDFHLFPKLKTFLGGQKFTTN 718
           APSD+ LF  L+  L G+ F  +
Sbjct: 277 APSDYFLFRSLQNSLNGKNFNND 299



 Score = 30.7 bits (66), Expect = 0.015
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 231 QSNNADFLRRFVTIDETWVRYYTPESKIQSKQWTQSRCPA 350
           ++ N  FL+R +T DE WV Y   + K   + W++ R PA
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRK---RSWSRPREPA 175


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 383 KVMAFVFWDADGILMIVYLPKGQTINGEYYANLLDNFHQCIQQKRPDLAKNKSSSAKTAL 562
           KV+  V+WD  GI+    L   +TIN   Y   L   +  +++KRP+L   KS       
Sbjct: 65  KVLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDN 124

Query: 563 GFTHV-LKLWQKSTN*SMILLSHPP 634
              H  L   QK       +L HPP
Sbjct: 125 ARPHTSLVTRQKLLELGWDVLPHPP 149



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 231 QSNNADFLRRFVTIDETWVRYYTPESKIQSKQ-WTQSRCPA 350
           ++ N  FL+R +T DE WV      + I+ K+ W++ R PA
Sbjct: 18  RNENDPFLKRPITGDEKWV-----VNNIKRKRWWSRPREPA 53


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 41.9 bits (94), Expect = 6e-06
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 305 IKNSIKTVDAIAMPSSKKAMAVKSAG----KVMAFVFWDADGILMIVYLPKGQTINGEYY 472
           + N+IK   + + P  + A     AG    KV+  V+WD  GI+    LP  +TIN   Y
Sbjct: 37  VYNNIKRKRSWSRPR-ESAQTTSKAGIHRKKVLLLVWWDHKGIVYFELLPPNRTINSVVY 95

Query: 473 ANLLDNFHQCIQQKRPDLAKNK 538
              L   +  I++KR +L   K
Sbjct: 96  IEHLTKLNNAIEEKRFELTNRK 117



 Score = 29.1 bits (62), Expect = 0.046
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 231 QSNNADFLRRFVTIDETWVRYYTPESKIQSKQWTQSR 341
           +S N  FL+R +T DE WV Y   + K   + W++ R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRK---RSWSRPR 51


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 305 IKNSIKTVDAIAMPSSKKAMAVKSAGKVMAFVFWDA 412
           + N  +T++A    ++++A+     GK+MAF+ WD+
Sbjct: 706 LSNMYRTMEANNYDTAEEAIRDIKIGKLMAFI-WDS 740


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 377 PTLQPWLFWSWA 342
           P L+P+  WSWA
Sbjct: 103 PLLEPYPNWSWA 114


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 671 ISGSLMALYQANKVGGTAKSYFNSLIFAIALTHV*TLAL 555
           + G +  +YQ N   G  K+  +SL+ A     V  LAL
Sbjct: 623 VVGPVKGIYQHNVASGLTKARGHSLLVADRPNFVTILAL 661


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 245 RFFTSICNNR*NMG 286
           +FFT  CN++ N G
Sbjct: 213 KFFTDYCNSKTNTG 226


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 245 RFFTSICNNR*NMG 286
           +FFT  CN++ N G
Sbjct: 213 KFFTDYCNSKTNTG 226


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 371 LQPWLFWSWAS 339
           LQP+  WSWA+
Sbjct: 108 LQPYPDWSWAN 118


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 371 LQPWLFWSWAS 339
           LQP+  WSWA+
Sbjct: 108 LQPYPDWSWAN 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,984
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)