Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4913
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...   162   4e-41
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    72   8e-14
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    30   0.40 
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    29   0.71 
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    29   0.94 
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    29   0.94 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.2  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   6.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   8.7  

>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score =  162 bits (394), Expect = 4e-41
 Identities = 78/130 (60%), Positives = 101/130 (77%)
 Frame = +1

Query: 295 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 474
           AI KGN E ARI+A NAIR++ ++LN L++S+R+DAVSSR+QTA+T R V+ +MAGVV+ 
Sbjct: 17  AITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRG 76

Query: 475 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVAD 654
           MD AMK+MNLE IS +MDKFE+QF+D++VQ+ YM  AM   T    PQ DVD L+Q VAD
Sbjct: 77  MDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVAD 136

Query: 655 EAGLELNMEL 684
           EAGLE N  +
Sbjct: 137 EAGLEFNQNM 146


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 41/179 (22%), Positives = 81/179 (45%)
 Frame = +1

Query: 166 GNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENA 345
           G +     +  H  +L  A +EL+R                  + + GN   ARI A + 
Sbjct: 10  GGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDL 69

Query: 346 IRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLM 525
           +R +N     +    ++ A+S R+QT  T+ ++  SM G  + +    KSMN+  ++ + 
Sbjct: 70  MRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARIT 129

Query: 526 DKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSGGSE 702
            +FE + E ++ +   ++  M         + + D L+ +V DE G++L+  LP   ++
Sbjct: 130 QQFERENEIMEQRQEMIDENMDDALEED-DEEEADELVNKVLDEIGVDLSQGLPDAATQ 187


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
 Frame = +1

Query: 334 AENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGV------VKAMDAAMKS 495
           A N +RQK    + L+   +     +  Q A+TT  + N+MA V       + + +  K+
Sbjct: 65  AMNVLRQKKIYESQLQQLQQQSF--NMEQAAMTTESLKNTMATVQTMQETARQLKSQSKN 122

Query: 496 MNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVD---NLLQQVADEAGL 666
           +++EKI  L D+ +   + +D      E      T   V + ++D     LQQ +   G 
Sbjct: 123 VSIEKIEKLQDEIQ---DYMDAAGELNEVLGQNMTDINVDEEELDAELEALQQESSWLGD 179

Query: 667 ELNMELPS 690
           +   E PS
Sbjct: 180 QSTAEKPS 187


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +1

Query: 490 KSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLE 669
           ++  + ++S  +DK E  F++ D Q++   NA+S        Q +V  L +Q   E  + 
Sbjct: 597 EAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNHEPPQEQANVAELNEQEQIELAMR 656

Query: 670 LNM 678
           L++
Sbjct: 657 LSL 659


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 553 LDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNM 678
           + +Q   +EN   QT+TT   + D+D   Q +A  A L+ N+
Sbjct: 158 VSLQDKEVENPDEQTSTTVFRKEDIDRYEQTIAKVAYLKKNL 199


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 439 KVTNSMAGVVKAMDAAM-KSMNLEKISTLMDKFESQFE 549
           ++ NS   V K +DA+   S+NLEK+S L D+ + +F+
Sbjct: 250 QLNNSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFD 287


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 499  NLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVP 615
            ++  +STL DK+ +   DLD  S Y E      T T +P
Sbjct: 1291 SISSVSTLGDKYWNLKIDLDNNSDYRELLRESQTLTLMP 1329


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 475 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTT 603
           ++ A++S + E +S   D+  S  + LDV    ++NA+ QT T
Sbjct: 203 LEKALES-DYEDVSIQFDRLASLDQALDVPIESIQNALQQTGT 244


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 629  IIYFNRLQMKLGWS*IWNFL 688
            I Y+N  ++++ WS IWN L
Sbjct: 1200 ISYYNMQRIRVEWSSIWNVL 1219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,579
Number of Sequences: 5004
Number of extensions: 50547
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)