Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4913
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106583-3|AAD03134.1| 205|Caenorhabditis elegans Hypothetical ... 203 1e-52
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 81 1e-15
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AL032657-11|CAA21737.3| 372|Caenorhabditis elegans Hypothetical... 30 1.5
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 30 2.0
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF067937-3|AAF99913.2| 559|Caenorhabditis elegans Hypothetical ... 28 8.1
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 8.1
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 8.1
AF003390-5|AAB54270.2| 873|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF106583-3|AAD03134.1| 205|Caenorhabditis elegans Hypothetical
protein F23C8.6 protein.
Length = 205
Score = 203 bits (495), Expect = 1e-52
Identities = 98/176 (55%), Positives = 129/176 (73%)
Frame = +1
Query: 163 LGNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAEN 342
+G SS A+EKHLF+LKFA K+LE+N+ AI+KGN E A++HAEN
Sbjct: 1 MGAGESSMALEKHLFDLKFAAKQLEKNAQRCEKDEKVEKDKLTAAIKKGNKEVAQVHAEN 60
Query: 343 AIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTL 522
AIR+KN+A+NY++M+AR+DAV++RVQTA T ++VT SM+GVVKAM++AMKSMNLEK+ L
Sbjct: 61 AIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVVKAMESAMKSMNLEKVQQL 120
Query: 523 MDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPS 690
MD+FE FEDLDV + ME M TT P+ VD L+ + AD+AG+ELN ELPS
Sbjct: 121 MDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQVDALIAEAADKAGIELNQELPS 176
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 80.6 bits (190), Expect = 1e-15
Identities = 41/158 (25%), Positives = 79/158 (50%)
Frame = +1
Query: 211 LKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLRMSA 390
L A++EL+R +K M+ ++ A++ +R + ++ M A
Sbjct: 22 LNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMDSVKVMAKDLVRTRRYIKKFIVMKA 81
Query: 391 RVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSS 570
+ AVS +VQT + + ++M GV KAM + + +NL +I +M +FE Q E +D++
Sbjct: 82 NIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEE 141
Query: 571 YMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMEL 684
M +A+ + + D ++ QV DE G+++ E+
Sbjct: 142 VMGDAIDDALGDAGDEEETDQIVNQVLDELGIQMGEEM 179
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/127 (27%), Positives = 63/127 (49%)
Frame = +1
Query: 304 KGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDA 483
KG+ + AR A+ ++ +NQ + MSAR+ V ++ + K+ ++M VK M A
Sbjct: 51 KGHNDAARHLAKQLVQLRNQKTKSIGMSARISGVQAQNSHMQSMAKMGSAMGTTVKTMKA 110
Query: 484 AMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAG 663
M LEK++ M +F+ E + + M + + + D ++ QV DE G
Sbjct: 111 MNAQMPLEKVAANMREFQMAQEKMGLTEEMMNDTLDSILDAPGDADEQDAIVNQVLDEIG 170
Query: 664 LELNMEL 684
+E+N +L
Sbjct: 171 IEMNSKL 177
>AL032657-11|CAA21737.3| 372|Caenorhabditis elegans Hypothetical
protein Y47H9C.11 protein.
Length = 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 496 MNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTT 609
+ L +L KF ED D +SY+ENAM Q T T
Sbjct: 156 LKLNNQESLQQKFRKSDEDED-SNSYLENAMDQLETIT 192
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 DAAMKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 648
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 3687 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 3746
Query: 649 ADEAGLELN 675
A + E++
Sbjct: 3747 ASQVANEID 3755
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 DAAMKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 648
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 4641 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 4700
Query: 649 ADEAGLELN 675
A + E++
Sbjct: 4701 ASQVANEID 4709
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 DAAMKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 648
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 5544 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 5603
Query: 649 ADEAGLELN 675
A + E++
Sbjct: 5604 ASQVANEID 5612
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 DAAMKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 648
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 6447 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 6506
Query: 649 ADEAGLELN 675
A + E++
Sbjct: 6507 ASQVANEID 6515
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 478 DAAMKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 648
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 7350 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 7409
Query: 649 ADEAGLELN 675
A + E++
Sbjct: 7410 ASQVANEID 7418
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 505 EKISTLMDKFESQFEDLDVQSSYMENAM 588
EK+++L+D FE+ F L S ENA+
Sbjct: 305 EKVASLLDTFETLFNQLGELSKISENAL 332
>AF067937-3|AAF99913.2| 559|Caenorhabditis elegans Hypothetical
protein F22F7.3 protein.
Length = 559
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +1
Query: 559 VQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPS 690
+++ Y+ N +++ VP DN+ Q ++D+ LE++ME+ S
Sbjct: 398 MKNMYLTN-LTKVRDGAVPVNPGDNITQLISDQHLLEIDMEMKS 440
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 411 QSSNSINN*KGYKFNGRCSKSNGCSNEINELRENFYTNGQVRES 542
QS+ S +G NG + +NG + + R+N Y NGQ RE+
Sbjct: 483 QSNGSNGRWRGNNRNG--ATTNGYGYQQHNNRQNHYQNGQQREN 524
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 411 QSSNSINN*KGYKFNGRCSKSNGCSNEINELRENFYTNGQVRES 542
QS+ S +G NG + +NG + + R+N Y NGQ RE+
Sbjct: 385 QSNGSNGRWRGNNRNG--ATTNGYGYQQHNNRQNHYQNGQQREN 426
>AF003390-5|AAB54270.2| 873|Caenorhabditis elegans Hypothetical
protein R155.4 protein.
Length = 873
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 448 NSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQS 567
+S+A VK A + + + L+DKF SQ+ LD++S
Sbjct: 156 SSIADKVKGFKGAYVVPDGDPYTNLLDKFVSQYVTLDIES 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,756
Number of Sequences: 27780
Number of extensions: 290334
Number of successful extensions: 923
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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