Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4910
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    29   4.3  
10_02_0050 - 4596444-4596634,4596855-4597107                           27   9.9  

>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 239  RFPIRAIKKRFFTLVHCCMTPSRHQSLFCAVSLIHI-TTY*CFKNYCKFNKTLNSY 403
            RF +   + ++FT + CC+  +R QSLF AV++ ++  T+  F N  +    +++Y
Sbjct: 1021 RFLVSEQENKYFTAI-CCLAHTRWQSLF-AVNIDNVRITFSNFGNSLRIGGDVSNY 1074


>10_02_0050 - 4596444-4596634,4596855-4597107
          Length = 147

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 478 GGIPKKTYNWPLGVGLRKTSINRYNFIAVSSILT*LKWL 594
           GG  K  +  PL  G+ KT +++  ++ +S +     WL
Sbjct: 84  GGFAKVVHELPLAEGIGKTVLSQLKWLLISELFLFYVWL 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,477,878
Number of Sequences: 37544
Number of extensions: 305792
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)