Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4910
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-3|CAA99902.1|  335|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z75547-3|CAA99902.1|  335|Caenorhabditis elegans Hypothetical
           protein R11D1.2 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 504 LATRGRTQKNLNQQIQLYR 560
           +ATR R + NL  QIQLYR
Sbjct: 254 IATRQRNEINLESQIQLYR 272


>AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical
           protein C08G5.1 protein.
          Length = 882

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 241 FSYKGNKKKVFHFGPLLHDTITASISFLCSFLNS 342
           FSY  + +K+ HF  L   + T S+S+   FL S
Sbjct: 12  FSYNRSFQKILHFVTLRESSRTISVSYFLIFLFS 45


>AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK6.6 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 217 TIRWAVCSFSYKGNKKKVFHFGPLLHDTITASISFLCSFLNSYNYLL 357
           ++R  +C+ +    + + F    +     +  I FL  FLN Y+Y++
Sbjct: 228 SVRSVICALAMPKRRAQAFSVSKIYQSLGSCFIFFLSPFLNLYHYVI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,169
Number of Sequences: 27780
Number of extensions: 282936
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)