Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4908
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    28   1.2  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.9  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   6.5  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.6  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/88 (22%), Positives = 37/88 (42%)
 Frame = -1

Query: 738  FLFNKLSYNKYFSKYFTDRQIYLKKFFMLIKEQSSTHKYVIIFCFYKF*TNCTYNNLPKL 559
            +L  +L  +++ S YF     +L   F+++  Q      + +   Y   T C YN   KL
Sbjct: 1337 YLGTQLQLDRFLSFYFAHPGFHLNNMFIMLSVQLFMVVLINLGAIYHVVTVCYYNGNQKL 1396

Query: 558  EEKKPNTTNESINCFKTPLVLKMICICL 475
                 +T+     C++   VL  +  C+
Sbjct: 1397 SY---DTSIVPRGCYQLGPVLSWLKRCV 1421


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 132 RCSIIVG*KLTFSSILIFKKKKLYFHTTINNNYSQS 239
           +C+++   K + SS+L   K K Y   T +N+YS +
Sbjct: 314 KCTVLNAKKESLSSVLKSTKTKWYDFETFSNSYSST 349


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 174  ILIFKKKKLYFHTTINNNYSQSSSLHFKHSKLYKKWKL 287
            I++  K     H TI   YS+S S++ K  +L +++KL
Sbjct: 3680 IVVLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKL 3717


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 167 KSQFLPDNNRTAMMCV*FIH 108
           K  F+P+ NR   +C+ FIH
Sbjct: 245 KLPFIPEGNRKCSLCMEFIH 264


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 573 NLPKL-EEKKPNTTNESINC 517
           N PK  E K+P+ TNE +NC
Sbjct: 529 NEPKTGENKEPSQTNEYVNC 548


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 447 NYSELKSLLVHSCLKHFKKKYD*NHLFIDKSHNLVTD 337
           N  EL+ ++++S  K F K  + ++LF D++   +TD
Sbjct: 689 NDLELRGIVINSLCKLFTKFSNFDYLFEDRTVTFLTD 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,793
Number of Sequences: 5004
Number of extensions: 64320
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)