Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4908
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653...    29   5.1  
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191...    28   6.8  
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353...    28   9.0  

>11_01_0780 -
           6531579-6531608,6531732-6532064,6533219-6533325,
           6534267-6534316,6535110-6537065,6537458-6538209
          Length = 1075

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 441 SELKSL-LVHSCLKHFKKKYD*NHLFIDKSHNLVTDCYYC 325
           SE+ +L L H   KH       NH   DK  N+V  CY C
Sbjct: 359 SEVDNLELWHHVQKHLSSSMATNHTSEDKLRNIVRLCYRC 398


>01_02_0070 -
           10817675-10818024,10818228-10818893,10819094-10819124,
           10820038-10820164,10820279-10820736
          Length = 543

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 725 NCLITSTFPNILQTDKFI*KNSLC*SRNSLLPTSMLLFF 609
           +C  +   PN  ++  F   N    SRNSLLP S++++F
Sbjct: 127 SCSASHISPNPRRSPLFPGGNHAAASRNSLLPRSLIIYF 165


>03_02_0991 -
           13034540-13034830,13035057-13035202,13035203-13035305,
           13037980-13038115,13038221-13038439,13038574-13038949,
           13040854-13041027,13041065-13041101
          Length = 493

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 720 SYNKYFSKYFTDRQIYLKKFFMLIKEQSSTH 628
           SY+ YF + +T  ++ L KFFML      T+
Sbjct: 221 SYSMYFEEEYTRARMILAKFFMLTSLLDDTY 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,456
Number of Sequences: 37544
Number of extensions: 283583
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)