Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4906
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    25   4.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.3  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 273 FEYNFKTM*ICWRYVSISN 329
           F YN KT+ +C R +S+ N
Sbjct: 2   FAYNHKTLHVCLRLISLRN 20


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 327 NDYRCDIYLFSIVFFFVCLLNAAVCYDRC*LMCSLLNIFLILGE*K 464
           N+     YLF  V   + L ++ V Y  C +  S  +IFL + E K
Sbjct: 197 NEVLHPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSVKESK 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,674
Number of Sequences: 5004
Number of extensions: 25753
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)