Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4904
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 30 1.7
09_04_0649 + 19212097-19212176,19212448-19212579,19212789-192131... 30 1.7
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993 29 2.9
10_07_0065 - 12527642-12528178,12531443-12531718 29 3.9
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 28 6.7
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 6.7
01_01_0939 - 7404209-7404490,7405057-7405368,7405470-7405609,740... 28 6.7
10_06_0164 + 11364436-11367280,11367357-11367715 28 8.9
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 28 8.9
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 8.9
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 28 8.9
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/100 (17%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +3
Query: 72 NGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHNLF--KSCEAGVIDYF 245
+G + SF+ C ++ + + I+++ +++ HY N + + + + +
Sbjct: 782 HGAERSFLAECEALRSVRHRNLVKIITACSTVDHYGNDFKALVYEFMPNRDLDKWLHPTI 841
Query: 246 DFGDATLTNIMEYAESDQLLIDVLKKIEEMQRNHNTVNII 365
D D + + ++ +E ++ +DV + ++ + R H V I+
Sbjct: 842 DDDDESFSRVLTMSERLRIALDVAEALDYLHR-HGQVPIV 880
>09_04_0649 +
19212097-19212176,19212448-19212579,19212789-19213196,
19213853-19213943,19214198-19214251
Length = 254
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 654 VCMVLH*ICFLDILLSNDLTHLNSILKKGFPLQPQFVLCAIANLPNS 514
+ +L +C D+ S ++ NS KK P P FVLC ++N P S
Sbjct: 166 ITKLLKEMCIDDMHPSFEVYLPNSKFKKTSPGDPSFVLCLLSNKPPS 212
>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
Length = 678
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 405 LQEVNKFCSEIIEIAAKSKNPFVIFHCNDVMEDDANHCLANLLSHKAQTVVEVENLSSGL 584
++E++KF +I I A KNPF + + D + A N+LS K + N SS
Sbjct: 244 IEELSKFNVQIPAIFAPRKNPFDLPYNEDNFPESAPSAPLNMLS-KFDLPFDEANESSST 302
Query: 585 SSDVSGHL 608
S H+
Sbjct: 303 GGANSNHV 310
>10_07_0065 - 12527642-12528178,12531443-12531718
Length = 270
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 51 RIVVKEINGCDGSFIVNC-VISYCIKQNSPLLIVSSHNSITHYHNVGLRM 197
RI++ + G G F+V C V+S C+K + + H+H L M
Sbjct: 108 RIIIAAVAGA-GGFVVACGVLSRCVKAEAAAAAANGRRHHHHHHTTMLLM 156
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 171 HYHNVGLRMNHNLFKS 218
HYH+ GLR+N NL++S
Sbjct: 817 HYHSGGLRLNPNLYES 832
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 327 EEMQRNHNTVNIIFDGITHLLDLQYTLQ--EVNKFCSEIIEIAAKSKN 464
E +++N + I D H+L+LQ+T+Q E N E + + + +N
Sbjct: 1577 EALEKNEELLKKIHDDDKHILELQFTIQRLEENTAAKENLLLREREQN 1624
>01_01_0939 -
7404209-7404490,7405057-7405368,7405470-7405609,
7406226-7406289,7406378-7406616,7406957-7406983,
7407590-7407749
Length = 407
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 171 HYHNVGLRMNHNLFKS 218
HYH+ GLR+N NL++S
Sbjct: 213 HYHSGGLRLNPNLYES 228
>10_06_0164 + 11364436-11367280,11367357-11367715
Length = 1067
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 237 DYFDFGDATLTNIMEYAESDQLLID--VLKKIEEMQRNHNTVNIIFDGITHLLDLQYTLQ 410
D + FG L A ++ + D L+K EM ++I+ HLL ++ TL
Sbjct: 961 DVYSFGIVLLEMFTGKAPTNDMFTDGLTLQKYAEMAYPARLIDIVDP---HLLSIENTLG 1017
Query: 411 EVNKFCSEIIEIA 449
E+N S + +A
Sbjct: 1018 EINCVMSSVTRLA 1030
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 96 VNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHN 206
V+C YC++ P ++ S ++ +HY++ ++M+ +
Sbjct: 292 VSCRYKYCVQCLVPTAMMGSSHAASHYNSQSMQMDRS 328
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 354 VNIIFDGITHLLDLQYTLQEVNKFCSE---IIEIAAKSKNPFVIFHCNDVMEDDAN 512
VN+ D T + Q TLQ VN + E I E+A K P + F C + D +
Sbjct: 186 VNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTASDTS 241
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 255 DATLTNIMEYAESDQLLIDVLKKIEEMQR 341
D + EYAE Q++ D+ KK EEM++
Sbjct: 338 DTSFVQCHEYAELYQIINDLSKKTEEMEK 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,060
Number of Sequences: 37544
Number of extensions: 327742
Number of successful extensions: 885
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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