Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4904
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 566 KPFFRIEFRCVRSFDNKISRKQI 634
           + +FRI   CV    N+ISR ++
Sbjct: 23  RDWFRISAGCVSRISNRISRNRV 45


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 9   ITSCLQLQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVG 188
           +T C     ++  NR ++    GC  + ++  V S   K N  LL V  H  +T + N+ 
Sbjct: 209 MTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELT-FENIL 267

Query: 189 LRMN 200
             +N
Sbjct: 268 SHIN 271


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 658 DIKPKNIFLIVAESKCCPGLLL 723
           DIK KN  + VA  +C  G+LL
Sbjct: 596 DIKDKNKKVNVAGCRCVKGILL 617


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 9   ITSCLQLQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVG 188
           +T C     ++  NR ++    GC  + ++  V S   K N  LL V  H  +T + N+ 
Sbjct: 209 MTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELT-FENIL 267

Query: 189 LRMN 200
             +N
Sbjct: 268 SHIN 271


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 563 HFNHSLCFVR*QICQTVVSIIFHHIIAMKY 474
           +FN  +  V   +  TV+ +IFHH    +Y
Sbjct: 260 YFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 563 HFNHSLCFVR*QICQTVVSIIFHHIIAMKY 474
           +FN  +  V   +  TV+ +IFHH    +Y
Sbjct: 260 YFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 563 HFNHSLCFVR*QICQTVVSIIFHHIIAMKY 474
           +FN  +  V   +  TV+ +IFHH    +Y
Sbjct: 260 YFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 563 HFNHSLCFVR*QICQTVVSIIFHHIIAMKY 474
           +FN  +  V   +  TV+ +IFHH    +Y
Sbjct: 260 YFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 563 HFNHSLCFVR*QICQTVVSIIFHHIIAMKY 474
           +FN  +  V   +  TV+ +IFHH    +Y
Sbjct: 260 YFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 563 HFNHSLCFVR*QICQTVVSIIFHHIIAMKY 474
           +FN  +  V   +  TV+ +IFHH    +Y
Sbjct: 260 YFNCIMFMVASSVVLTVLVLIFHHRTPDRY 289


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 500 FHHIIAMKYYKRIF*FSSNFYNFR 429
           FH+II    Y RIF   S  Y+ R
Sbjct: 130 FHNIIMPNVYIRIFPNGSVLYSIR 153


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 500 FHHIIAMKYYKRIF*FSSNFYNFR 429
           FH+II    Y RIF   S  Y+ R
Sbjct: 130 FHNIIMPNVYIRIFPNGSVLYSIR 153


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -3

Query: 571 RFSTSTTVCALCDSKFAKQWLASSSI 494
           R  T    C LC   F++ WL    I
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLLQGHI 62


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +1

Query: 529 CYRTKHKLWLKWK 567
           C+ T+  LW+ W+
Sbjct: 380 CFLTRGDLWISWE 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,997
Number of Sequences: 438
Number of extensions: 4222
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)