Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4903
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290...    28   7.1  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    28   7.1  
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130...    28   7.1  
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107           28   7.1  
04_04_0560 - 26239712-26239758,26240220-26240763                       28   9.3  
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    28   9.3  
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    28   9.3  
03_02_0520 + 9092020-9092079,9092253-9093047                           28   9.3  

>12_02_1084 -
           25928373-25928426,25928551-25928652,25928913-25929039,
           25929292-25930730,25931430-25931447
          Length = 579

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/87 (22%), Positives = 41/87 (47%)
 Frame = +3

Query: 420 HHRLVQVLGSYKKWRCRQLKVTMLQISVESA*SSMKNSLNGLRKENFHLKLRIYFLEEKL 599
           HH  V ++     +R +  +  +L +  +S  +SMK+SL    ++    K  I+ L + L
Sbjct: 354 HHEQVNLVNDLTNFREKVCEQELLILESKSESNSMKSSLYEALQQINVCKQEIHGLTDNL 413

Query: 600 GNGSPPAVQGLLEHNVRLQVEVEELRR 680
                 A++   E N  L   ++E+++
Sbjct: 414 -TAMSIALEEAKEQNASLDATIQEMKK 439


>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 357  SFEEKWPHYLERTVLNMLRVYHHRLVQ 437
            SF+ KW  YL   V N LR +   LVQ
Sbjct: 1032 SFQSKWRTYLRSCVRNNLRTFFQVLVQ 1058


>05_01_0184 -
           1298640-1298751,1298936-1299027,1299695-1299910,
           1300045-1300614
          Length = 329

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 416 IPSPFSTSPRKL--QEMAMPSTEGHDVTN-ISGISMKQYEEQFKRIAEGEFSLE 568
           IPSP +T  R    ++  +P      +++ +S   MKQYEE +K + E    LE
Sbjct: 200 IPSPPATLMRPWCNEDEQVPQLTPFKISHGVSDTMMKQYEEDYKYLVEEGLDLE 253


>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
          Length = 662

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 416 IPSPFSTSPRKL--QEMAMPSTEGHDVTN-ISGISMKQYEEQFKRIAEGEFSLE 568
           IPSP +T  R    ++  +P      +++ +S   MKQYEE +K + E    LE
Sbjct: 200 IPSPPATLMRPWCNEDEQVPQLTPFKISHGVSDTMMKQYEEDYKYLVEEGLDLE 253


>04_04_0560 - 26239712-26239758,26240220-26240763
          Length = 196

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 747 PAALERRWVQLRPRAAPACQLIAVVTLPLLPVIERCALRDLVPRAG 610
           P  LER  +    R   AC ++ V+    +PV ERC     VP AG
Sbjct: 113 PEQLERMLLSTAGRGRVACLVVDVLASWAVPVAERCG----VPAAG 154


>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 396 VLNMLRVYHHRLVQVLGSYKKWRCRQLKVTMLQISVESA 512
           +LN++       ++   SYKKW+ R LK  ++Q+ +  A
Sbjct: 620 MLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPA 658


>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 600 GNGSPPAVQGLLEHNVRLQVEVEELR 677
           G G PPA  GLL  N+ L    E++R
Sbjct: 53  GYGRPPAPTGLLVRNISLTARPEDIR 78


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 476 EGHDVTNISGISMKQYEEQFKRIAEGEFSLEIEDLFFRRKTRQRIPARGTRSLRAQRSIT 655
           E  DVT          E+ F+R+ +G+ + E+   F  RK   RI  R    L+A +  T
Sbjct: 3   EYEDVTKFEYEFNIMREKHFERVVQGKRNTELASEFDSRKKLPRIKMRTPMLLQASKVYT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,420,934
Number of Sequences: 37544
Number of extensions: 387067
Number of successful extensions: 1218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)