Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4903
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 34 0.096
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 34 0.096
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 34 0.096
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z77134-4|CAE17934.1| 148|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 28 8.3
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ... 28 8.3
AF098986-6|AAC67427.1| 484|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 34.3 bits (75), Expect = 0.096
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 468 RQLKVTMLQI-SVESA*SSMKNSLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHN 644
R L+ T + ++A + + GLR+EN L I L ++LG G +V + +
Sbjct: 1481 RDLRNTSTDLFKAKNAQEELAEVVEGLRRENKSLSQEIKDLTDQLGEGG-RSVHEMQKII 1539
Query: 645 VRLQVEVEELRRQLTDKQELLAA 713
RL++E EEL+ L + + L A
Sbjct: 1540 RRLEIEKEELQHALDEAEAALEA 1562
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 34.3 bits (75), Expect = 0.096
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 468 RQLKVTMLQI-SVESA*SSMKNSLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHN 644
R L+ T + ++A + + GLR+EN L I L ++LG G +V + +
Sbjct: 1481 RDLRNTSTDLFKAKNAQEELAEVVEGLRRENKSLSQEIKDLTDQLGEGG-RSVHEMQKII 1539
Query: 645 VRLQVEVEELRRQLTDKQELLAA 713
RL++E EEL+ L + + L A
Sbjct: 1540 RRLEIEKEELQHALDEAEAALEA 1562
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 34.3 bits (75), Expect = 0.096
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 468 RQLKVTMLQI-SVESA*SSMKNSLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHN 644
R L+ T + ++A + + GLR+EN L I L ++LG G +V + +
Sbjct: 1484 RDLRNTSTDLFKAKNAQEELAEVVEGLRRENKSLSQEIKDLTDQLGEGG-RSVHEMQKII 1542
Query: 645 VRLQVEVEELRRQLTDKQELLAA 713
RL++E EEL+ L + + L A
Sbjct: 1543 RRLEIEKEELQHALDEAEAALEA 1565
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 587 RRKTRQRIPARG-----TRSLRAQRSITGRSGRVTTAIN*QAGAARGRS*THRRSRAAG 748
+ ++R R P+R +RS+ +S R+GRV+ + +R RS T RSR++G
Sbjct: 171 KSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSG 229
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 587 RRKTRQRIPARG-----TRSLRAQRSITGRSGRVTTAIN*QAGAARGRS*THRRSRAAG 748
+ ++R R P+R +RS+ +S R+GRV+ + +R RS T RSR++G
Sbjct: 171 KSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSG 229
>Z77134-4|CAE17934.1| 148|Caenorhabditis elegans Hypothetical
protein R09H10.6 protein.
Length = 148
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +2
Query: 386 RTHSSKHASSIPSPFSTSPRKLQEMAMPSTEGHDVTNISGISMKQYEEQFKRIAEGEFSL 565
R S+K + F S E G D ++ K+YEE FKR+ E
Sbjct: 42 RIDSNKDGQLTFTEFLLSDHPFLEHQSRRFHGFDTNGDGTVTKKEYEEYFKRL---EKHK 98
Query: 566 EIEDLFFRRKTRQR 607
D+FF + R R
Sbjct: 99 RRSDMFFNKFNRDR 112
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 438 LVLNGDGILEACLELCVLGNVAIFPQMIVINQQFLI 331
++LN G ++ LC+ GNV IF +++I ++ ++
Sbjct: 209 MLLNFIGHMKLLTILCLFGNVIIFAAIVLITKELMV 244
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
F54D1.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 462 RCRQLKV-TMLQISVESA*SSMKNSLNGLRKENFHLKLRIYFLEEK---LGNGSPPAVQ 626
R R+LK+ T +SV ++ L +ENF LK R+Y +E K + N S VQ
Sbjct: 1220 RIRKLKLNTKEPLSVTDLTELTCQRVHDLMQENFLLKSRVYDIETKIDHISNSSDEVVQ 1278
>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1122
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 462 RCRQLKV-TMLQISVESA*SSMKNSLNGLRKENFHLKLRIYFLEEK---LGNGSPPAVQ 626
R R+LK+ T +SV ++ L +ENF LK R+Y +E K + N S VQ
Sbjct: 936 RIRKLKLNTKEPLSVTDLTELTCQRVHDLMQENFLLKSRVYDIETKIDHISNSSDEVVQ 994
>AF098986-6|AAC67427.1| 484|Caenorhabditis elegans Hypothetical
protein C36C9.5 protein.
Length = 484
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 522 MKNSLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHN 644
+ NS++G R +FHLK+ L + N PP + +LE N
Sbjct: 367 LHNSMSGARGTHFHLKISSLPLPKP--NMEPPTLHIMLESN 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,165
Number of Sequences: 27780
Number of extensions: 349268
Number of successful extensions: 1084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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