Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4901
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  WFRKWRIDINPTKSAAVLFKRG-RPPNITSSIPLRSRRANTS 200
           W +  +I++NP+ +  V  KR   P  + + + + S  A+ S
Sbjct: 841 WLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 882


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  WFRKWRIDINPTKSAAVLFKRG-RPPNITSSIPLRSRRANTS 200
           W +  +I++NP+ +  V  KR   P  + + + + S  A+ S
Sbjct: 837 WLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 878


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 180 SRRANTSAVSPITLFGQPIPWV 245
           ++ A T  +SP  L    IPWV
Sbjct: 69  AKGAFTGEISPAMLLDNGIPWV 90


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 671 GYVISSGYDERVLMSCRLLKMAQRC 597
           GY  +S +D +V+ + ++LKM   C
Sbjct: 210 GYTNNSKWDFKVIKATKVLKMYACC 234


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 665 VISSGYDERVLMSCRLLKMAQRCRL*ILTKRVELQVVVEIHIPKEPRR 522
           ++ +G   R+L   +LL + +  RL  L + V     V I + ++P R
Sbjct: 198 ILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPER 245


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +2

Query: 35  ASSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHH 160
           A++A    ++  G +  E   RH   +     LQ  +  +HH
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,142
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)