Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4897
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 29 0.61
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 27 2.5
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 4.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 4.3
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 26 5.7
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 25 7.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.6
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 25 10.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 10.0
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz... 25 10.0
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -2
Query: 120 LFSSINWCFTIKVRGNCDNLK---YNLHSKIKVNDINQFSQN 4
L++ WC ++ N DNL+ YN H K+ N+INQ ++
Sbjct: 788 LYTQEAWCK--EMMENLDNLRTGPYNFHDKVFENEINQLIES 827
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 497 WYYPFFTASNEFFNNVKISLYWFVFLSCRFRFIGLRMFNSNNFG 366
W + + +KI ++W + L C F FI LR +N G
Sbjct: 213 WLFNQIFSHRNSLTRIKIIIWWIICLGC-FIFILLRSNRNNPLG 255
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -1
Query: 397 DSGCLTVTTLGRAPSVVVIDAADNFFSLIV*YFSLGLTVPTESKASEFSRDE--LSRFIP 224
D G ++ + G V+ A FSL++ Y ++ + K S D+ L ++ P
Sbjct: 8 DKGLISRSGFGSRHVRRVVKALALIFSLLILYLTISNVSDSPPKRDSLSLDDIVLQKYKP 67
Query: 223 DYTSITFLLCTRKYVTKTHLIRFTHLI 143
Y + ++ + + T L+++ LI
Sbjct: 68 SYKQVNWI--DSQGLKDTFLVKYGDLI 92
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 517 RLLLFRPMVGDLTHLVEFYLYGNKPGCTFPQKFGL 621
+L F+ + + + + + LYGNK T+P KF L
Sbjct: 1156 KLKRFQELFSSIRYAIYYKLYGNKVSLTYP-KFEL 1189
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = +1
Query: 535 PMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWA------NLQTLALN 654
P+ DL E LYGN P + VW+ LQT+AL+
Sbjct: 103 PVASDLEWATEVDLYGNPPILKLQLRDSFVWSMLAKFQGLQTIALD 148
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 511 LLRSNGITLSSRHLMNSLIT 452
+L S G+T RHL+N L++
Sbjct: 47 VLSSRGVTYRQRHLLNDLVS 66
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 634 NWPKPTQISEGKCTQVYSHTNKTLLNV*DLLPLGEREVIDDLLR 503
N P P+Q+SE K T K+ V + PL E + LLR
Sbjct: 331 NSPIPSQLSENKLTLESFEHRKSFDQVREEAPLEEDSLEQQLLR 374
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 37 YLRVQVVFEIITITSYLDCKTPVDATK 117
+LR++ +FE I + DCK+P+ T+
Sbjct: 163 FLRIKTLFEEIFMFLKRDCKSPLVLTR 189
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 287 YRTDGIQSFRVFS*RVVEI--HSGLYKYHFFIVHQKICD 177
Y T+ + S + ++ R E HSGL + FIVH C+
Sbjct: 454 YATEFLTSIQFYALRYREDNEHSGLVRICLFIVHYLSCE 492
>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 23 ISLTFILECKLYLRLSQLPRTLIVKHQLMLLKSIDL 130
++LTF+ KL ++L LI +H LML + D+
Sbjct: 19 VNLTFVDYAKLPPNYAELLANLIDQHGLMLFDTADV 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,037
Number of Sequences: 5004
Number of extensions: 60808
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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