Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4897
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 31 1.1
02_04_0612 + 24370446-24373044,24373135-24373541 29 2.6
02_02_0032 - 6227556-6227926,6228322-6231085 29 2.6
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 29 3.4
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523 29 3.4
02_02_0025 + 6183328-6186127,6186265-6186623 29 3.4
10_01_0102 - 1244294-1245478 29 4.5
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 29 4.5
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 29 4.5
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363... 29 4.5
02_02_0030 - 6207784-6208154,6208286-6211310 29 4.5
11_06_0130 - 20408835-20411771 28 5.9
11_04_0446 - 17825324-17825420,17825720-17825800,17826106-178262... 28 5.9
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 502 ISANHRLLLFRPMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALN 654
+S NH VG+LT V F L+GN + PQ+ G + NLQ L L+
Sbjct: 309 LSENHLTGSIPSSVGNLTSSVYFSLWGNHITGSIPQEIGNL-VNLQQLDLS 358
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
+G+LT L Y+Y N+ T PQ FG++ ++L L L+E L
Sbjct: 274 LGNLTMLKILYIYLNQHTGTIPQVFGML-SSLVELDLSENHL 314
>02_04_0612 + 24370446-24373044,24373135-24373541
Length = 1001
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 493 YHWISANHRLLLFRPMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
Y ++SAN +G++T LVE YL N+ P K + NL LAL + +L
Sbjct: 178 YLYLSANKLTGTIPQALGNITTLVEIYLDTNRFEGGIPDKLWQL-PNLTILALGQNML 234
>02_02_0032 - 6227556-6227926,6228322-6231085
Length = 1044
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALN 654
+G L+ L EFY+ GN + P G W L+ L L+
Sbjct: 558 IGSLSQLTEFYIDGNNLNGSIPANIG-QWRQLEKLDLS 594
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 29.1 bits (62), Expect = 3.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 543 RRSYTFSRVLFVWE*TWVHFPSE 611
+R ++F +++ +WE W H+ SE
Sbjct: 585 KREFSFDQIMLLWEVLWTHYWSE 607
>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
Length = 973
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 535 PMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
P + +L++L+ YLY N+ T P + NLQ L L++ L+
Sbjct: 480 PTMANLSNLIAIYLYANQLTETIPTHM-MQMKNLQMLNLHDNLM 522
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALN 654
+G+L L E YL GN T P G W +L+ L L+
Sbjct: 483 IGNLVKLTELYLDGNNFSGTIPASLG-QWRHLEKLNLS 519
>10_01_0102 - 1244294-1245478
Length = 394
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
+ +LT+L YL+GN+ PQK ++ +Q L LN L
Sbjct: 287 LANLTNLATLYLWGNELSGPIPQKLCML-TKMQYLGLNSNKL 327
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 173 NAFDKIYSSHSIKNTNQYFLVASTGVLQSRYEVIVIISNTTCTLR*KLMIL 21
N FD IYS +I + + + +A G+L + Y +V ++ LR M+L
Sbjct: 317 NTFDVIYSRDTILHIHLFASIADHGIL-TYYNFVVELTTEATVLRLLYMVL 366
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLLYKV 675
+ DLT L+E L N T P + GL+ NLQ L L+ L +V
Sbjct: 539 IKDLTSLIELDLSDNNI-TTLPPELGLLEPNLQVLKLDGNPLRRV 582
>02_02_0468 +
10633992-10634064,10635998-10636130,10636244-10636315,
10637028-10637171,10637271-10637342,10637451-10637516,
10637603-10637673,10637796-10637936,10638347-10638688,
10638989-10639383,10639481-10639795
Length = 607
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 535 PMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
P +G+L +L L GN+ P++FG + ++L +L L + LL
Sbjct: 82 PRIGELKYLTVLSLAGNRISGGIPEQFGNL-SSLTSLDLEDNLL 124
>02_02_0030 - 6207784-6208154,6208286-6211310
Length = 1131
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 502 ISANHRLLLFRPMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALN 654
++ N+ L +G+L L EF+L GN + P G W L+ L L+
Sbjct: 545 LAQNNLSGLIPDSIGNLAQLTEFHLDGNNFNGSIPSNLG-QWRQLEKLDLS 594
>11_06_0130 - 20408835-20411771
Length = 978
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Frame = +1
Query: 448 LTLLKNSLDAVKKG*YHWISANHRLLLFRPM--------VGDLTHLVEFYLYGNKPGCTF 603
L L NSL + + HRL+LF +G+LT + LYGN T
Sbjct: 482 LVLFNNSLTGSLPSSFSKLKNLHRLILFNNKLSGYLQLTIGNLTQITNLELYGNAFSGTI 541
Query: 604 PQKFG 618
P G
Sbjct: 542 PSTLG 546
>11_04_0446 -
17825324-17825420,17825720-17825800,17826106-17826249,
17826387-17826458,17827042-17827174,17827276-17827354
Length = 201
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 535 PMVGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
P +G L++L L+GN T PQ FG + NL L L + L
Sbjct: 84 PQLGGLSNLQYLNLHGNNLTGTIPQSFGNL-TNLVRLELQKNSL 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,944
Number of Sequences: 37544
Number of extensions: 337977
Number of successful extensions: 819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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