Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4897
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003235-1|AAO24991.1|  527|Drosophila melanogaster LP05663p pro...    61   1e-09
AY128499-1|AAM75092.1|  641|Drosophila melanogaster RH55123p pro...    61   1e-09
AY094653-1|AAM11006.1|  740|Drosophila melanogaster AT11177p pro...    37   0.029
AE014297-2729|AAF55715.1|  740|Drosophila melanogaster CG4755-PA...    37   0.029
AE014297-2347|AAN13743.1|  494|Drosophila melanogaster CG5407-PB...    33   0.27 
AE014297-2346|AAF55415.2|  494|Drosophila melanogaster CG5407-PA...    33   0.27 
AE014298-847|AAF46129.2|  523|Drosophila melanogaster CG32750-PA...    29   7.7  

>BT003235-1|AAO24991.1|  527|Drosophila melanogaster LP05663p
           protein.
          Length = 527

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = +3

Query: 363 RPKVVTVKHPESXXXXXXXXXXXXIQADLDVIKEFIRCREERVIPLDLSKSSIT 524
           RPK+VTVKHPES            IQAD DVIK   RCR+E +  LDLSKSSIT
Sbjct: 6   RPKMVTVKHPESNKPKPTTKKSKPIQADQDVIKALQRCRDEGIKRLDLSKSSIT 59



 Score = 33.5 bits (73), Expect = 0.27
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
           V +  HL E YLY NK G   P + G +  +L+ LALNE  L
Sbjct: 65  VKECVHLTELYLYSNKIG-QLPPEIGCL-VSLRNLALNENSL 104


>AY128499-1|AAM75092.1|  641|Drosophila melanogaster RH55123p
           protein.
          Length = 641

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = +3

Query: 363 RPKVVTVKHPESXXXXXXXXXXXXIQADLDVIKEFIRCREERVIPLDLSKSSIT 524
           RPK+VTVKHPES            IQAD DVIK   RCR+E +  LDLSKSSIT
Sbjct: 120 RPKMVTVKHPESNKPKPTTKKSKPIQADQDVIKALQRCRDEGIKRLDLSKSSIT 173



 Score = 33.5 bits (73), Expect = 0.27
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
           V +  HL E YLY NK G   P + G +  +L+ LALNE  L
Sbjct: 179 VKECVHLTELYLYSNKIG-QLPPEIGCL-VSLRNLALNENSL 218


>AY094653-1|AAM11006.1|  740|Drosophila melanogaster AT11177p
           protein.
          Length = 740

 Score = 36.7 bits (81), Expect = 0.029
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 177 VTYFLVHNKKVILV*SGMNLDNSSRENSEALDSVGTVSPREKYHTMREKKLSAASITTTE 356
           V ++L   K+ + V  G +  NSS EN +  DS    SPR  Y T+R +K +A S  TT 
Sbjct: 452 VEFYLTLQKQKLFV-EGKSKSNSSNENLDRNDSEVMESPR--YGTLRRQKANAPSPPTTN 508

Query: 357 G 359
           G
Sbjct: 509 G 509


>AE014297-2729|AAF55715.1|  740|Drosophila melanogaster CG4755-PA
           protein.
          Length = 740

 Score = 36.7 bits (81), Expect = 0.029
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 177 VTYFLVHNKKVILV*SGMNLDNSSRENSEALDSVGTVSPREKYHTMREKKLSAASITTTE 356
           V ++L   K+ + V  G +  NSS EN +  DS    SPR  Y T+R +K +A S  TT 
Sbjct: 452 VEFYLTLQKQKLFV-EGKSKSNSSNENLDRNDSEVMESPR--YGTLRRQKANAPSPPTTN 508

Query: 357 G 359
           G
Sbjct: 509 G 509


>AE014297-2347|AAN13743.1|  494|Drosophila melanogaster CG5407-PB,
           isoform B protein.
          Length = 494

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
           V +  HL E YLY NK G   P + G +  +L+ LALNE  L
Sbjct: 32  VKECVHLTELYLYSNKIG-QLPPEIGCL-VSLRNLALNENSL 71


>AE014297-2346|AAF55415.2|  494|Drosophila melanogaster CG5407-PA,
           isoform A protein.
          Length = 494

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 541 VGDLTHLVEFYLYGNKPGCTFPQKFGLVWANLQTLALNEKLL 666
           V +  HL E YLY NK G   P + G +  +L+ LALNE  L
Sbjct: 32  VKECVHLTELYLYSNKIG-QLPPEIGCL-VSLRNLALNENSL 71


>AE014298-847|AAF46129.2|  523|Drosophila melanogaster CG32750-PA
           protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 444 DLDVIKEFIRCREERVIPLDLSKSSITSLSPN 539
           DL ++ EF+R     ++P  LS SS  +L P+
Sbjct: 426 DLQILGEFVRRPRRLILPSTLSSSSFYALQPS 457


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,434,337
Number of Sequences: 53049
Number of extensions: 599858
Number of successful extensions: 1435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)