Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4894
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 54 1e-08
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 49 6e-07
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 48 1e-06
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 44 2e-05
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 42 6e-05
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 42 1e-04
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 39 8e-04
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 31 0.12
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 30 0.27
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 29 0.83
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 4.4
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 4.4
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 4.4
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.9
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi... 26 5.9
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 26 5.9
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 7.8
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +1
Query: 448 AASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLG 627
AAS T++V + L +G PN +DE+ +P+H A G+ D+++IL+ G + N +D G
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70
Query: 628 NTPL 639
TPL
Sbjct: 71 ETPL 74
Score = 32.3 bits (70), Expect = 0.068
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 544 LAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNH 663
+AA G DVV L G +PN D G TP+H A H
Sbjct: 10 IAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGH 49
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 49.2 bits (112), Expect = 6e-07
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNC-SDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 615
L +AA + + LL+ GAD N + + +P+H AA RG V V L++HGA+P K
Sbjct: 38 LHWAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLK 97
Query: 616 DTLGNTPLHLA 648
D G LHLA
Sbjct: 98 DKQGFNCLHLA 108
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGA-DPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNN- 612
L AAS + V+ L+ + D N +DE + LH AA + + + LL HGA+ N
Sbjct: 4 LFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAI 63
Query: 613 KDTLGNTPLHLAACTNHINSCH 678
L P+H AA + + H
Sbjct: 64 GGDLQAAPIHWAAKRGSVKTVH 85
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP 606
L +A+ N + LL+ GAD +DE K +PLH + G + ++++L+ G P
Sbjct: 138 LMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEGGIP 193
Score = 31.1 bits (67), Expect = 0.16
Identities = 27/96 (28%), Positives = 43/96 (44%)
Frame = +1
Query: 364 CSTKARHCRLKHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLH 543
C H + GG + A+ H +AA + + V L++ GADP D+ + LH
Sbjct: 50 CKFLLEHGADVNAIGGDLQAAPIH---WAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLH 106
Query: 544 LAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAA 651
LA +V LL + + +D +TPL A+
Sbjct: 107 LAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWAS 142
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 618
L A + LV LL + D+ + +PL A+ G + LLR GA+ D
Sbjct: 105 LHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATD 164
Query: 619 TLGNTPLH 642
TPLH
Sbjct: 165 EDKMTPLH 172
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 415 VCASRNHKLRFAASTNNTELVERLLKAGADPNCSD-EHKRSPLHLAACRGYVDVVRILLR 591
V AS N L A N E V+ LLK GA+P+ D + +PL LA+ G ++V IL+
Sbjct: 363 VDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILVA 422
Query: 592 HGANPNNKDTLGNTPLHLAACTNHIN 669
GA+ + D+ G T + A +++
Sbjct: 423 SGASVDEVDSSGWTAMEQAVVRGYLH 448
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 472 LVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGN-TPLHLA 648
+VE L+ AG +PN D + LH A + V++LL+ GANP+ +D L + TPL LA
Sbjct: 349 IVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLA 408
Query: 649 ACT 657
+ T
Sbjct: 409 SAT 411
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 439 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 615
L +AA +V+ L KA D ++PLH AA G + VV+ L+ A N
Sbjct: 111 LHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTS 170
Query: 616 DTLGNTPLHLAACTNH 663
D+ G TPLH A H
Sbjct: 171 DSYGFTPLHFALAEGH 186
Score = 43.2 bits (97), Expect = 4e-05
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 618
L AA+ ++V+ L+ A N SD + +PLH A G+ DV L+R GA+ KD
Sbjct: 145 LHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGADTLRKD 204
Query: 619 TLGNTPLHLA----ACTNHINSC 675
+ +T L + C + +C
Sbjct: 205 SENHTALEVCPDRIVCNEFLEAC 227
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 499 ADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHINSC 675
+D + +E RS LHL A G + L G + N +D LG TPLH A+ +H + C
Sbjct: 853 SDFSLVNESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDIC 911
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 484 LLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAA 651
L AG D N D +PLH A+ + D+ LL +GA P+ G P+ L++
Sbjct: 881 LCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPIDLSS 936
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 433 HKLRFAASTNNTELVERLLKA-GADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 594
H L + N ++V+ +L D N D++K +PLHLAA G D+V LL H
Sbjct: 57 HALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 538 LHLAACRGYVDVVRILLRHGANPNNKDTLGNTP 636
LH+A ++V+ LL +GA+P +D G P
Sbjct: 193 LHVATKAKDAELVKWLLDNGADPYRRDKFGKLP 225
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 618
L A + ELV+ LL GADP D+ + P +R LLR + +
Sbjct: 193 LHVATKAKDAELVKWLLDNGADPYRRDKFGKLPTDYTKDEN----MRSLLRSYSGNRDSS 248
Query: 619 TLGNTPLHLA 648
+ P H++
Sbjct: 249 SAPAVPQHMS 258
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 439 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP--N 609
L +A + EL++ ++ K + + DE+ S LH+A+ G++ VV+ ++ + N
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVIN 65
Query: 610 NKDTLGNTPLHLAACTNHINSC 675
++ GNT +H AA H C
Sbjct: 66 AQNESGNTAMHWAALNGHAEIC 87
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +1
Query: 424 SRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGAN 603
S N + +AA + E+ + LL+AG DP+ + +++SP++ A R V+ + L
Sbjct: 70 SGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDLFLDFEIA 129
Query: 604 PNNKDTLGN 630
+++ G+
Sbjct: 130 KGSEENTGD 138
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 523 HKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLA 648
H +PLH A + +V LLR+GA+P + G TP ++
Sbjct: 432 HTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEIS 473
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 594
L +A + N +LV +LL+ GADP + + ++P ++ V ++ RH
Sbjct: 437 LHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVKDEFLIARH 488
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 517 DEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPL 639
D+ + LH A G+++++++LLR A+ + L TPL
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.7 bits (61), Expect = 0.83
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 373 KARHCRL-KHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPN 510
+A +C L K T A + F+A N T+L+E +L ADPN
Sbjct: 159 RAGNCSLAKKEMEYTTSAIATNFSNFSALHNRTKLIETILNLEADPN 205
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 445 TATCDSWMRKLFHRIYA*DGSVLLL 371
+ATC +W R L A DG+V++L
Sbjct: 416 SATCPTWRRSLSSYSVAIDGTVIML 440
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 532 SPLHLAACRGYVDVVRILL-RHGANPNNKDTLGNTPL 639
S L LA R Y++ VR+L+ RH +N+++L N P+
Sbjct: 166 SRLFLALARAYLEKVRVLVWRH----DNEESLANIPV 198
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 248 SNTGLSLLSFPVSTPESVIM 189
++TGLSLLS P S P S M
Sbjct: 153 NDTGLSLLSLPKSVPHSPAM 172
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 265 KHISNDQTQDYRCSHFQCRLQSLSLCSFLMKYTRSSHFYV 146
K +ND+ DYR + + + + C KY S HF +
Sbjct: 94 KVTANDKHYDYRLKSHRIKDKITTKCKGTTKYFNSRHFEI 133
>SPBC21H7.07c |his5||imidazoleglycerol phosphate
dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 244 FDHSKCVLEFNLPAIPITQSGQPMPVEFLDEPHDHVGKIKC 366
F H+ C L+ L + SG+P V L + VG++ C
Sbjct: 114 FGHAYCPLDEALSRSVVDLSGRPYAVIDLGLKREKVGELSC 154
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 651 CSQMKRCVSKCVFIVRVSPVTQKYSHYIDIATAS 550
C+ +K+C + I+R SPV + + Y+ I+ A+
Sbjct: 292 CALIKQCANHFHQIIRDSPVKVRQACYLPISNAT 325
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 262 VLEFNLPAIPITQSGQPMPVEFLDEPH 342
+L+ N + +TQSG P+ + ++ E H
Sbjct: 598 ILQSNPNTVVVTQSGTPIEMPWISEAH 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,512
Number of Sequences: 5004
Number of extensions: 63902
Number of successful extensions: 188
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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