Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4894
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.89 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 193 MTDSGVDTGNESSDNPVFDHSKCVLEFNL 279
           M  SG+    ES D P + H   ++EF L
Sbjct: 847 MAASGITESAESEDGPRWGHLSTLVEFAL 875


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 223 HFQCRLQSLSLCSFLMKYTR 164
           HFQCR  + S+  +   YT+
Sbjct: 433 HFQCRYPNASVTPYNKNYTK 452


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 196 TDSGVDTGNESSDNP 240
           +DSG+++G E  D P
Sbjct: 578 SDSGIESGTEKPDKP 592


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 67  GRDIYLLFLKQNMKFWL 117
           G + Y  FL+Q   FWL
Sbjct: 228 GLNTYYFFLRQAFPFWL 244


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 67  GRDIYLLFLKQNMKFWL 117
           G + Y  FL+Q   FWL
Sbjct: 228 GLNTYYFFLRQAFPFWL 244


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 218 PVSTPESVIMQFLNEIY*IITLLR 147
           P+S P+SV + F+N  Y  I L+R
Sbjct: 612 PLSVPDSVELLFINNNY--INLVR 633



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 537 IAFSSLPWLCRC 572
           ++  S PW CRC
Sbjct: 919 LSLGSNPWSCRC 930


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 404 YLCLRRQCLAFVEHLIFPT 348
           Y+ +RR+ L +  +LI PT
Sbjct: 226 YIIIRRKTLFYTVNLILPT 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,692
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)